Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq1 747 0.0 >seq1 Length=126035930 Score = 747 bits (828), Expect = 0.0 Identities = 674/844 (80%), Gaps = 11/844 (1%) Strand=Plus/Minus Query 241 TTTTGCGACACCACGTGGCCATTTGAGGTATATATGGCCGAGTGAGCGAGCAGGATCTCC 300 |||||||||||||||||| || | |||||| | | | ||||||| |||| | |||| Sbjct 79119852 TTTTGCGACACCACGTGGTCAGGAGGGGTATAAAAGCGCCAGTGAGCATGCAGCAGCTCC 79119793 Query 301 ATTTTGACCGCGAA------ATTTGAAC-GAGCAGCAGCC---ATGCCGGGTTTCTACGA 350 ||| | ||| ||| | || || || | |||| |||| ||| || ||||| Sbjct 79119792 ATTCTTTCCGTGAAGCACGTGTGTGTACATAGGA-AAGCCATTATGCTGGGATTTTACGA 79119734 Query 351 GATCGTGATCAAGGTGCCGAGCGACCTGGACGAGCACCTGCCGGGCATTTCTGACTCGTT 410 ||| ||| | ||||| || ||||||||||| |||||||| || ||||||||||| || Sbjct 79119733 GATTGTGGTGAAGGTTCCCAGCGACCTGGATGAGCACCTACCCAATATTTCTGACTCCTT 79119674 Query 411 TGTGAACTGGGTGGCCGAGAAGGAATGGGAGCTGCCCCCGGATTCTGACATGGATCTGAA 470 ||| ||||||||| | || ||||||||||| ||||| || |||||||||||||| | || Sbjct 79119673 TGTAAACTGGGTGTCAGAAAAGGAATGGGAACTGCCGCCAGATTCTGACATGGACATAAA 79119614 Query 471 TCTGATCGAGCAGGCACCCCTGACCGTGGCCGAGAAGCTGCAGCGCGACTTCCTGGTCCA 530 |||||| || ||| | || |||||| ||||| ||||||| |||||| |||| ||| | Sbjct 79119613 TCTGATAGAACAGACGCCGCTGACCATGGCCAAGAAGCTCCAGCGCCACTTTCTGACGGA 79119554 Query 531 ATGGCGCCGCGTGAGTAAGGCCCCGGAGGCCCTGTTCTTTGTTCAGTTCGAGAAGGGCGA 590 ||| | ||||| ||||||||||||||||| || ||||| || || || ||||| || Sbjct 79119553 GTGGAGGTCGGTGAGCAAGGCCCCGGAGGCCCTCTTTTTTGTCCAATTTGAAAAGGGGGA 79119494 Query 591 GAGCTACTTCCACCTTCACGTTCTGGTGGAGACCACGGGGGTCAAGTCCATGGTGCTAGG 650 | |||||||||||| ||| | |||||||| |||||||| | || |||||| | || Sbjct 79119493 GTCCTACTTCCACCTGCACATCCTGGTGGAAACCACGGGCATGAAAAGCATGGTTTTGGG 79119434 Query 651 CCGCTTCCTGAGTCAGATTCGGGAGAAGCTGGTCCAGACCATCTACCGCGGGGTCGAGCC 710 ||| | | || ||||| |||| ||||| | ||| ||||||||| |||| || Sbjct 79119433 CCGATATTTAGCCCAAATTCGTCAGAAACTGGTTAACCGCATTTACCGCGGGATCGAACC 79119374 Query 711 CACGCTGCCCAACTGGTTCGCGGTGACCAAGACGCGTAATGGCGCCGGCGGGGGGAACAA 770 || |||| |||||||||||||| || || |||| |||||||||||| |||||||||| Sbjct 79119373 GACCATGCCAAACTGGTTCGCGGTCACTAAAACGCATAATGGCGCCGGTTGGGGGAACAA 79119314 Query 771 GGTGGTGGACGAGTGCTACATCCCCAACTACCTCCTGCCCAAGACCCAGCCCGAGCTGCA 830 |||||||||||| |||||||||||||||||||| || ||||| |||||||||||||| || Sbjct 79119313 GGTGGTGGACGATTGCTACATCCCCAACTACCTGCTCCCCAAAACCCAGCCCGAGCTCCA 79119254 Query 831 GTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGTTTGAACCTGGCCGAACGCAA 890 ||||| |||||||||||||||| |||||||||||||||||||||||||||| || | ||| Sbjct 79119253 GTGGGAGTGGACTAACATGGAGCAGTATATAAGCGCGTGTTTGAACCTGGCAGAGCACAA 79119194 Query 891 ACGGCTCGTGGCGCAGCACCTGACCCACGTCAGCCAGACGCAGGAGCAGAACAAGGAGAA 950 | |||| ||||| ||||| |||| |||||||||||||||||||||||||||| ||||| Sbjct 79119193 ATGGCTTGTGGCACAGCATTTGACACACGTCAGCCAGACGCAGGAGCAGAACAGAGAGAA 79119134 Query 951 TCTGAACCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGCTACATGGA 1010 || ||| ||||||||||||||||| || |||||||||||||| ||||| |||||||||| Sbjct 79119133 TCAGAATCCCAATTCTGACGCGCCGGTAATCAGGTCAAAAACTTCCGCTGGCTACATGGA 79119074 Query 1011 GCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGA 1070 |||||| |||||||||||||| | | || | || || ||||| |||||||||||||| Sbjct 79119073 GCTGGTGGGGTGGCTGGTGGAGTGCAGAATTAAGTCAGAAAAGCAATGGATCCAGGAGGA 79119014 Query 1071 CCAG 1074 |||| Sbjct 79119013 CCAG 79119010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14994871323960