Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Chlorocebus_20sabaeus_20[refseq_20GCF_5F000409795.2_202014-03-25] 2,004 sequences; 2,789,656,328 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq1 700 0.0 >seq1 Length=126035930 Score = 700 bits (776), Expect = 0.0 Identities = 672/850 (79%), Gaps = 17/850 (2%) Strand=Plus/Minus Query 134 TTTTGCGACACCACGTGGCCATTTGAGGTATATATGGCCGAGTGAGCGAGCAGGATCTCC 193 |||||||||||||||||| || | |||||| | | | ||||||| |||| | |||| Sbjct 79119852 TTTTGCGACACCACGTGGTCAGGAGGGGTATAAAAGCGCCAGTGAGCATGCAGCAGCTCC 79119793 Query 194 ATTTTGACCGCGAA------ATTTGAAC-GAGCAGCAGCC---ATGCCGGGCTTCTACGA 243 ||| | ||| ||| | || || || | |||| |||| ||| || ||||| Sbjct 79119792 ATTCTTTCCGTGAAGCACGTGTGTGTACATAGGA-AAGCCATTATGCTGGGATTTTACGA 79119734 Query 244 GATCGTGATCAAGGTGCCGAGCGACCTGGACGAGCACCTGCCGGGCATTTCTGACTCGTT 303 ||| ||| | ||||| || ||||||||||| |||||||| || ||||||||||| || Sbjct 79119733 GATTGTGGTGAAGGTTCCCAGCGACCTGGATGAGCACCTACCCAATATTTCTGACTCCTT 79119674 Query 304 TGTGAACTGGGTGGCCGAGAAGGAATGGGAGCTGCCCCCGGATTCTGACATGGATCGGAA 363 ||| ||||||||| | || ||||||||||| ||||| || |||||||||||||| || Sbjct 79119673 TGTAAACTGGGTGTCAGAAAAGGAATGGGAACTGCCGCCAGATTCTGACATGGACATAAA 79119614 Query 364 TCTGATCGAGCAGGCACCCCTGACCGTGGCCGAGAAGCTGCAGCGCGACTTCCTGGTCCA 423 |||||| || ||| | || |||||| ||||| ||||||| |||||| |||| ||| | Sbjct 79119613 TCTGATAGAACAGACGCCGCTGACCATGGCCAAGAAGCTCCAGCGCCACTTTCTGACGGA 79119554 Query 424 ATGGCGCCGCGTGAGTAAGGCCCCGGAGGCCCTCTTCTTTGTTCAGTTCGAGAAGGGCGA 483 ||| | ||||| |||||||||||||||||||| ||||| || || || ||||| || Sbjct 79119553 GTGGAGGTCGGTGAGCAAGGCCCCGGAGGCCCTCTTTTTTGTCCAATTTGAAAAGGGGGA 79119494 Query 484 GAGCTACTTTCACCTGCACGTTCTGGTCGAGACCACGGGGGTCAAGTCCATGGTGCTAGG 543 | |||||| ||||||||| | ||||| || |||||||| | || |||||| | || Sbjct 79119493 GTCCTACTTCCACCTGCACATCCTGGTGGAAACCACGGGCATGAAAAGCATGGTTTTGGG 79119434 Query 544 CCGCTTCCTGAGTCAGATTCGGGAAAAGCTTGGTCCAGACCATCTACCCGCGGGGTCGAG 603 ||| | | || ||||| | || | |||| | ||| || ||||||| |||| Sbjct 79119433 CCGATATTTAGCCCAAATTCGTCAGAAAC-TGGTTAACCGCATTTA-CCGCGGGATCGA- 79119377 Query 604 CCCCACCTTGCCCAACTGGTTCGCGGTGACCAAAGACGCGGTAATGGCGCCGGCgggggg 663 || ||| |||| |||||||||||||| || ||| |||| |||||||||||| |||| Sbjct 79119376 ACCGACCATGCCAAACTGGTTCGCGGTCACTAAA-ACGC-ATAATGGCGCCGG-TTGGGG 79119320 Query 664 gAACAAGGTGGTGGACGAGTGCTACATCCCCAACTACCTCCTGCCCAAGACTCAGCCCGA 723 |||||||||||||||||| |||||||||||||||||||| || ||||| || |||||||| Sbjct 79119319 GAACAAGGTGGTGGACGATTGCTACATCCCCAACTACCTGCTCCCCAAAACCCAGCCCGA 79119260 Query 724 GCTGCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCGCGTGCTTGAACCTGGCCGA 783 ||| ||||||| |||||||||||||||| |||||||||||||||| ||||||||||| || Sbjct 79119259 GCTCCAGTGGGAGTGGACTAACATGGAGCAGTATATAAGCGCGTGTTTGAACCTGGCAGA 79119200 Query 784 GCGCAAACGGCTCGTGGCGCAGCACCTGACCCACGTCAGCCAGACGCAGGAGCAGAACAA 843 || |||| |||| ||||| ||||| |||| |||||||||||||||||||||||||||| Sbjct 79119199 GCACAAATGGCTTGTGGCACAGCATTTGACACACGTCAGCCAGACGCAGGAGCAGAACAG 79119140 Query 844 GGAGAATCTGAACCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGCTA 903 ||||||| ||| ||||||||||||||||| || |||||||||||||| ||||| |||| Sbjct 79119139 AGAGAATCAGAATCCCAATTCTGACGCGCCGGTAATCAGGTCAAAAACTTCCGCTGGCTA 79119080 Query 904 TATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCA 963 ||||||||||| |||||||||||||| | | || | || || ||||| |||||||| Sbjct 79119079 CATGGAGCTGGTGGGGTGGCTGGTGGAGTGCAGAATTAAGTCAGAAAAGCAATGGATCCA 79119020 Query 964 GGAGGACCAG 973 |||||||||| Sbjct 79119019 GGAGGACCAG 79119010 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13945294329880