Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq4127 839 0.0 >seq4127 Length=8380095 Score = 839 bits (930), Expect = 0.0 Identities = 590/669 (88%), Gaps = 3/669 (0%) Strand=Plus/Minus Query 111 AGAGGGAGTGGCCAACTCCATCACTAGGGGTTCCTGGAGGGGTGGAGTCGTGACGTGAAT 170 |||||| ||||||||| |||||| | | ||||| ||||||||||||||||||||| | Sbjct 2546588 AGAGGGGGTGGCCAACGCCATCATTGGAGGTTCTGTGAGGGGTGGAGTCGTGACGTGT-T 2546530 Query 171 TACGTCATAGGGTTAGGGAGGTCCTGTATTAGAGGTCACGTGAGTG-TTTTGCGACATTT 229 |||||||||||||||| |||||||||||||| |||||||||||| |||||||||| || Sbjct 2546529 GACGTCATAGGGTTAGGCAGGTCCTGTATTAGCTGTCACGTGAGTGCTTTTGCGACAGTT 2546470 Query 230 TGCGACACCATGTGGTCACGCTGGGTATTTAAGCCCGAGTGAGCACGCAGGGTCTCCATT 289 |||||||||| ||||| || ||||| |||||||||||||||||||||| |||||||| Sbjct 2546469 TGCGACACCACGTGGTAACAAGTGGTATATAAGCCCGAGTGAGCACGCAGGATCTCCATT 2546410 Query 290 TTGAAGCGGGAGGTTTGAACGCGCAGCCGCCATGCCGGGGTTTTACGAGATTGTGATTAA 349 |||| ||| | |||||||| || || ||||||||||| || |||||||||||||| || Sbjct 2546409 TTGA-GCGCGGAATTTGAACGAGCCGCAGCCATGCCGGGCTTCTACGAGATTGTGATCAA 2546351 Query 350 GGTCCCCAGCGACCTTGACGAGCATCTGCCCGGCATTTCTGACAGCTTTGTGAACTGGGT 409 ||| || |||||||| |||||||| ||||| || |||||||||||||||||||||||||| Sbjct 2546350 GGTGCCGAGCGACCTGGACGAGCACCTGCCGGGGATTTCTGACAGCTTTGTGAACTGGGT 2546291 Query 410 GGCCGAGAAGGAATGGGAGTTGCCGCCAGATTCTGACATGGATCTGAATCTGATTGAGCA 469 |||||||||||||||||||||||| || |||||||||||||||| ||||||||||||||| Sbjct 2546290 GGCCGAGAAGGAATGGGAGTTGCCCCCGGATTCTGACATGGATCAGAATCTGATTGAGCA 2546231 Query 470 GGCACCCCTGACCGTGGCCGAGAAGCTGCAGCGCGACTTTCTGACGGAATGGCGCCGTGT 529 |||||||||||||||||||||||||||||| |||||||| ||| ||||||||||||||| Sbjct 2546230 GGCACCCCTGACCGTGGCCGAGAAGCTGCAACGCGACTTCCTGGTGGAATGGCGCCGTGT 2546171 Query 530 GAGTAAGGCCCCGGAGGCCCTTTTCTTTGTGCAATTTGAGAAGGGAGAGAGCTACTTCCA 589 ||||||||||| ||||||||| || ||||| ||||| |||||||| |||||||||||||| Sbjct 2546170 GAGTAAGGCCCTGGAGGCCCTCTTTTTTGTCCAATTCGAGAAGGGGGAGAGCTACTTCCA 2546111 Query 590 CATGCACGTGCTCGTGGAAACCACCGGGGTGAAATCCATGGTTTTGGGACGTTTCCTGAG 649 | ||||| | || ||||| ||||||||||| ||||||||||| |||| || || ||||| Sbjct 2546110 CCTGCACATCCTGGTGGAGACCACCGGGGTCAAATCCATGGTGCTGGGCCGATTTCTGAG 2546051 Query 650 TCAGATTCGCGAAAAACTGATTCAGAGAATTTACCGCGGGATCGAGCCGACTTTGCCAAA 709 |||||||||||| || ||| ||||| | || |||||||||||||||||||| |||| || Sbjct 2546050 TCAGATTCGCGACAAGCTGGTTCAGCGCATGTACCGCGGGATCGAGCCGACCATGCCGAA 2545991 Query 710 CTGGTTCGCGGTCACAAAGACCAGAAATGGCGCCGGAGGCGGGAACAAGGTGGTGGATGA 769 ||||||||||||||||||||| | |||||||||||||||||||||||||||||||| || Sbjct 2545990 CTGGTTCGCGGTCACAAAGACGCGTAATGGCGCCGGAGGCGGGAACAAGGTGGTGGACGA 2545931 Query 770 GTGCTACAT 778 |||||||| Sbjct 2545930 CTGCTACAT 2545922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14858666825040