Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq4127 695 0.0 >seq4127 Length=8380095 Score = 695 bits (770), Expect = 0.0 Identities = 588/714 (82%), Gaps = 18/714 (3%) Strand=Plus/Minus Query 72 CTTTGCACGTCCGGCCCCACCGAGCGAGCGAGTGCGCATAGAGGGAGTGGCCAACTCCAT 131 ||||| || | ||||||| |||||||||||| |||||||||||| ||||||||| |||| Sbjct 2546627 CTTTGGTCGCCAGGCCCCAGCGAGCGAGCGAGCGCGCATAGAGGGGGTGGCCAACGCCAT 2546568 Query 132 CACTAGAGGTATGGCAGTGACGTAACGCGAAGCGCGCGAAGCGA-GACCAC----GCCTA 186 || | ||||| | |||| | | | || || || | | ||| | | || Sbjct 2546567 CATTGGAGGTT---CTGTGAGGG---GTGGAGT-CGTGACGTGTTGACGTCATAGGGTTA 2546515 Query 187 C-CAG---CTGCGTCAGCAGTCAGGTGACC-CTTTTGCGACAGTTTGCGACACCACGTGG 241 ||| ||| | ||| |||| |||| ||||||||||||||||||||||||||||| Sbjct 2546514 GGCAGGTCCTGTATTAGCTGTCACGTGAGTGCTTTTGCGACAGTTTGCGACACCACGTGG 2546455 Query 242 CCGCTGAGGGTATATATTCTCGAGTGAGCGAACCAGGAGCTCCATTTTGACCGCGAAATT 301 | |||||||| | ||||||||| | ||||| ||||||||||| |||| |||| Sbjct 2546454 TAACAAGTGGTATATAAGCCCGAGTGAGC-ACGCAGGATCTCCATTTTGAGCGCGGAATT 2546396 Query 302 TGAACGAGCAGCAGCCATGCCGGGGTTCTACGAGATTGTCCTGAAGGTCCCGAGTGACCT 361 ||||||||| |||||||||||||| |||||||||||||| | ||||| ||||| ||||| Sbjct 2546395 TGAACGAGCCGCAGCCATGCCGGGCTTCTACGAGATTGTGATCAAGGTGCCGAGCGACCT 2546336 Query 362 GGACGAGCGCCTGCCGGGCATTTCTAACTCGTTTGTTAACTGGGTGGCCGAGAAGGAATG 421 |||||||| ||||||||| |||||| || ||||| ||||||||||||||||||||||| Sbjct 2546335 GGACGAGCACCTGCCGGGGATTTCTGACAGCTTTGTGAACTGGGTGGCCGAGAAGGAATG 2546276 Query 422 GGACGTGCCGCCGGATTCTGACATGGATCCGAATCTGATTGAGCAGGCACCCCTGACCGT 481 ||| |||| ||||||||||||||||||| |||||||||||||||||||||||||||||| Sbjct 2546275 GGAGTTGCCCCCGGATTCTGACATGGATCAGAATCTGATTGAGCAGGCACCCCTGACCGT 2546216 Query 482 GGCCGAAAAGCTTCAGCGCGAGTTCCTGGTGGAGTGGCGCCGCGTGAGTAAGGCCCCGGA 541 |||||| ||||| || ||||| ||||||||||| |||||||| ||||||||||||| ||| Sbjct 2546215 GGCCGAGAAGCTGCAACGCGACTTCCTGGTGGAATGGCGCCGTGTGAGTAAGGCCCTGGA 2546156 Query 542 GGCCCTCTTTTTTGTCCAGTTCGAAAAGGGGGAGACCTACTTCCACCTGCACGTGCTGAT 601 |||||||||||||||||| ||||| |||||||||| |||||||||||||||| | ||| | Sbjct 2546155 GGCCCTCTTTTTTGTCCAATTCGAGAAGGGGGAGAGCTACTTCCACCTGCACATCCTGGT 2546096 Query 602 TGAGACCATCGGGGTCAAATCCATGGTGGTCGGCCGCTACGTGAGCCAGATTAAAGAGAA 661 ||||||| ||||||||||||||||||| | ||||| | |||| |||||| || || Sbjct 2546095 GGAGACCACCGGGGTCAAATCCATGGTGCTGGGCCGATTTCTGAGTCAGATTCGCGACAA 2546036 Query 662 GCTGGTGACCCGCATCTACCGCGGGGTCGAGCCGCAGCTTCCGAACTGGTTCGCGGTGAC 721 |||||| ||||| ||||||||| |||||||| | ||||||||||||||||| || Sbjct 2546035 GCTGGTTCAGCGCATGTACCGCGGGATCGAGCCGACCATGCCGAACTGGTTCGCGGTCAC 2545976 Query 722 CAAAACGCGAAATGGCGCCGGGGGCGGGAACAAGGTGGTGGACGACTGCTACAT 775 || ||||| ||||||||||| |||||||||||||||||||||||||||||||| Sbjct 2545975 AAAGACGCGTAATGGCGCCGGAGGCGGGAACAAGGTGGTGGACGACTGCTACAT 2545922 Score = 104 bits (114), Expect = 7e-19 Identities = 66/72 (92%), Gaps = 0/72 (0%) Strand=Plus/Plus Query 4586 ACCTCTAGTGATGGAGTTGGCCACTCCCTCTATGCGCACTCGCTCGCTCGGTGGGGCCTG 4645 ||||| | |||||| ||||||||| |||||||||||| |||||||||||| ||||||||| Sbjct 2546558 ACCTCCAATGATGGCGTTGGCCACCCCCTCTATGCGCGCTCGCTCGCTCGCTGGGGCCTG 2546617 Query 4646 GCGACCAAAGGT 4657 |||||||||||| Sbjct 2546618 GCGACCAAAGGT 2546629 Score = 87.8 bits (96), Expect = 5e-14 Identities = 53/56 (95%), Gaps = 0/56 (0%) Strand=Plus/Plus Query 1 TTGGCCACTCCCTCTATGCGCACTCGCTCGCTCGGTGGGGCCTGGCGACCAAAGGT 56 |||||||| |||||||||||| |||||||||||| ||||||||||||||||||||| Sbjct 2546574 TTGGCCACCCCCTCTATGCGCGCTCGCTCGCTCGCTGGGGCCTGGCGACCAAAGGT 2546629 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15009045236060