Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Colobus_20angolensis_20palliatus_20[refseq_20GCF_5F000951035.1_20201 5-03-12] 13,124 sequences; 2,970,124,662 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq4127 780 0.0 >seq4127 Length=8380095 Score = 780 bits (864), Expect = 0.0 Identities = 547/613 (89%), Gaps = 9/613 (1%) Strand=Plus/Minus Query 81 ACGTCATAGGGG-AGT--GGTCCTGTATTAGCTGTCACGTGAGTGCTTTTGCGGCATTTT 137 ||||||||||| || ||||||||||||||||||||||||||||||||||| || ||| Sbjct 2546528 ACGTCATAGGGTTAGGCAGGTCCTGTATTAGCTGTCACGTGAGTGCTTTTGCGACAGTTT 2546469 Query 138 GCGACACCACGTGGCCATTTGAGGTATATATGGCCGAGTGAGCGAGCAGGATCTCCATTT 197 |||||||||||||| | | |||||||| | |||||||||| ||||||||||||||| Sbjct 2546468 GCGACACCACGTGGTAACAAGTGGTATATAAGCCCGAGTGAGCACGCAGGATCTCCATTT 2546409 Query 198 TGACCGCGAAATTTGAACGAGCAGCAGCCATGCCGGGCTTCTACGAGATCGTGATCAAGG 257 ||| |||| ||||||||||||| |||||||||||||||||||||||||| |||||||||| Sbjct 2546408 TGAGCGCGGAATTTGAACGAGCCGCAGCCATGCCGGGCTTCTACGAGATTGTGATCAAGG 2546349 Query 258 TGCCGAGCGACCTGGACGAGCACCTGCCGGGCATTTCTGACTCGTTTGTGAACTGGGTGG 317 ||||||||||||||||||||||||||||||| ||||||||| |||||||||||||||| Sbjct 2546348 TGCCGAGCGACCTGGACGAGCACCTGCCGGGGATTTCTGACAGCTTTGTGAACTGGGTGG 2546289 Query 318 CCGAGAAGGAATGGGAGCTGCCCCCGGATTCTGACATGGATCGGAATCTGATCGAGCAGG 377 ||||||||||||||||| |||||||||||||||||||||||| ||||||||| ||||||| Sbjct 2546288 CCGAGAAGGAATGGGAGTTGCCCCCGGATTCTGACATGGATCAGAATCTGATTGAGCAGG 2546229 Query 378 CACCCCTGACCGTGGCCGAGAAGCTGCAGCGCGACTTCCTGGTCCAATGGCGCCGCGTGA 437 |||||||||||||||||||||||||||| |||||||||||||| |||||||||| |||| Sbjct 2546228 CACCCCTGACCGTGGCCGAGAAGCTGCAACGCGACTTCCTGGTGGAATGGCGCCGTGTGA 2546169 Query 438 GTAAGGCCCCGGAGGCCCTCTTCTTTGTTCAGTTCGAGAAGGGCGAGAGCTACTTTCACC 497 ||||||||| |||||||||||| ||||| || ||||||||||| ||||||||||| |||| Sbjct 2546168 GTAAGGCCCTGGAGGCCCTCTTTTTTGTCCAATTCGAGAAGGGGGAGAGCTACTTCCACC 2546109 Query 498 TGCACGTTCTGGTCGAGACCACGGGGGTCAAGTCCATGGTGCTAGGCCGCTTCCTGAGTC 557 ||||| | ||||| |||||||| |||||||| ||||||||||| ||||| || ||||||| Sbjct 2546108 TGCACATCCTGGTGGAGACCACCGGGGTCAAATCCATGGTGCTGGGCCGATTTCTGAGTC 2546049 Query 558 AGATTCGGGAAAAGCTTGGTCCAGACCATCTACCCGCGGGGTCGAGCCCCACCTTGCCCA 617 ||||||| || |||| |||| ||| ||| || ||||||| ||||| || ||| |||| | Sbjct 2546048 AGATTCGCGACAAGC-TGGTTCAGCGCATGTA-CCGCGGGATCGAG-CCGACCATGCCGA 2545992 Query 618 ACTGGTTCGCGGTGACCAAAGACGCGGTAATGGCGCCGGCgggggggAACAAGGTGGTGG 677 ||||||||||||| | ||||||||| ||||||||||||| || |||||||||||||||| Sbjct 2545991 ACTGGTTCGCGGTCA-CAAAGACGC-GTAATGGCGCCGG-AGGCGGGAACAAGGTGGTGG 2545935 Query 678 ACGAGTGCTACAT 690 |||| |||||||| Sbjct 2545934 ACGACTGCTACAT 2545922 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13943598196280