Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001422.1 Length=5386 Score E Sequences producing significant alignments: (Bits) Value seq2651317 132 2e-27 seq2269950 132 2e-27 seq2193364 132 2e-27 seq2830709 129 2e-26 seq2160490 129 2e-26 seq2145782 129 2e-26 >seq2651317 Length=312 Score = 132 bits (146), Expect = 2e-27 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 2761 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAACGTTTATGTT 2820 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 312 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTT 253 Query 2821 GGTTTCATGGTTTGGTCT 2838 |||||||| ||||||||| Sbjct 252 GGTTTCATAGTTTGGTCT 235 >seq2269950 Length=217 Score = 132 bits (146), Expect = 2e-27 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 2761 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAACGTTTATGTT 2820 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 217 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTT 158 Query 2821 GGTTTCATGGTTTGGTCT 2838 |||||||| ||||||||| Sbjct 157 GGTTTCATAGTTTGGTCT 140 >seq2193364 Length=208 Score = 132 bits (146), Expect = 2e-27 Identities = 76/78 (97%), Gaps = 0/78 (0%) Strand=Plus/Minus Query 2761 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAACGTTTATGTT 2820 |||||||||||||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 208 GTCAAGGACTGTGTGACTATTGACGTCCTTCCCCGTACGCCGGGCAATAATGTTTATGTT 149 Query 2821 GGTTTCATGGTTTGGTCT 2838 |||||||| ||||||||| Sbjct 148 GGTTTCATAGTTTGGTCT 131 >seq2830709 Length=213 Score = 129 bits (142), Expect = 2e-26 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 3154 CTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCG 3213 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 213 CTATGGCTAGAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCCCTTCTGCCG 154 Query 3214 TTTCTGATAAGTTGCT 3229 |||||||||||||||| Sbjct 153 TTTCTGATAAGTTGCT 138 >seq2160490 Length=216 Score = 129 bits (142), Expect = 2e-26 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Plus Query 3154 CTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCG 3213 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 1 CTATGGCTAGAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCCCTTCTGCCG 60 Query 3214 TTTCTGATAAGTTGCT 3229 |||||||||||||||| Sbjct 61 TTTCTGATAAGTTGCT 76 >seq2145782 Length=211 Score = 129 bits (142), Expect = 2e-26 Identities = 74/76 (97%), Gaps = 0/76 (0%) Strand=Plus/Minus Query 3154 CTATGGCTAAAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCACTTCTGCCG 3213 ||||||||| |||||||||||||||||||||||||||||||||||||||| ||||||||| Sbjct 211 CTATGGCTAGAGCTGGTAAAGGACTTCTTGAAGGTACGTTGCAGGCTGGCCCTTCTGCCG 152 Query 3214 TTTCTGATAAGTTGCT 3229 |||||||||||||||| Sbjct 151 TTTCTGATAAGTTGCT 136 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16518025043075