Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001701.1 Length=5106 Score E Sequences producing significant alignments: (Bits) Value seq1530899 282 1e-72 >seq1530899 Length=6551 Score = 282 bits (312), Expect = 1e-72 Identities = 336/452 (74%), Gaps = 3/452 (1%) Strand=Plus/Plus Query 1512 TTCAACAAAAGAAACGCCATATGGCTCTACGGACCTGCCACCACCGGGAAGACCAACATT 1571 |||||||| ||||| |||||||| ||||| ||||||| |||| || || || |||| Sbjct 4670 TTCAACAAGAGAAATGCCATATGATTCTACCGACCTGCAACCATGGGAAAAACAAACACA 4729 Query 1572 GCAGAAGCTATTGCCCATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAAC 1631 ||||| | ||||||||||||||| ||||| ||||| ||||| |||||||||||| | ||| Sbjct 4730 GCAGAGGTTATTGCCCATGCTGTGCCCTTTTATGGTTGTGTGAACTGGACTAATTAAAAC 4789 Query 1632 TTTCCTTTTAATGATTGTGTTGATAAAATGCTGATTTGGTGGGAGGAGGGAAAAATGACT 1691 ||| |||||||||| ||||| || |||||| | | |||| ||||||||| |||| |||| Sbjct 4790 TTTTCTTTTAATGACTGTGTGGACAAAATGATCTTATGGTAGGAGGAGGGTAAAAAGACT 4849 Query 1692 AATAAGGTTGTTGAATCTGCAAAAGCAATTTTGGGAGGGTCTGCTGTCCGGGTAGACCAG 1751 || || |||| || ||| | ||| | || ||||| || |||||||| | || || || Sbjct 4850 AACAAAATTGTAGAGTCTACCAAACCTATGTTGGG-GGATCTGCTGTTCATGTTGATCAA 4908 Query 1752 AAATGTAAAGGATCTGTTTGTATTGAACCTACTCCTGTAATTATTACTAGTAATACTGAT 1811 |||||||||| ||||| |||||| |||||| ||| || ||||| ||||||||||| Sbjct 4909 AAATGTAAAGATTCTGTACAAATTGAAACTACTCTTGTTATCATTACAAGTAATACTGAC 4968 Query 1812 ATGTGTATGATTGTTGATGGCAACTCTACTACAATGGAACATAGAATACCATTAGAGGAG 1871 |||| | | || | ||||| ||| ||||| | ||||| | | |||| | || || Sbjct 4969 ATGTATGTTATAGGGGATGGTAACAGTACTAGTTTCGAACACAAACCACCACTGGAAGAA 5028 Query 1872 CGTATGTTTCAAATTGTCCTATCACATAAATTGGAG-CCTTCTTTTGGAAAAATTTCTAA 1930 | |||||| ||| | | |||| | ||| | | ||||| |||||| ||| Sbjct 5029 TGCATGTTT-TTGTTGAGATTTATAGTAAAATTGAGACATGACTTTGGTAAAATTAATAA 5087 Query 1931 AAAAGAAGTCAGAGAATTTTTCAAATGGGCCA 1962 ||||| |||||||| || | ||||| || Sbjct 5088 GTGGGAAGTTAGAGAATTCTTTAGATGGGGCA 5119 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15653691832075