Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq1892775 102 2e-18 >seq1892775 Length=1727 Score = 102 bits (112), Expect = 2e-18 Identities = 191/276 (69%), Gaps = 10/276 (4%) Strand=Plus/Plus Query 4039 GACGTGTACCTTCAAGGACCTATCTGGGCAAAGATTCCTCACACGGATGGACACTTTCAT 4098 ||| | || ||||| || ||||| ||||| || |||||| | || |||||| | ||||| Sbjct 785 GACATTTATCTTCAGGGCCCTATTTGGGCTAAAATTCCTGATACAGATGGAAATTTTCAG 844 Query 4099 CCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACATCCGCCTCCTCAAATCATGATCAAA 4158 ||| ||| ||||||| ||||| || ||||| || ||| ||| | | ||| Sbjct 845 CCTCATCCAAACGTGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTCTAAAA 904 Query 4159 AATACTCCGGTACCGGCAAATCCTCCGACGA-CTTT-CAGCCCGGCCAAGTTTGCTTCAT 4216 |||||||| |||| || | || || | | |||| ||| || | || || | Sbjct 905 AATACTCCAATACCCACAGAACCACCTGCTAGCTTTACAGAGTCTCCTA--TTAAGTCTT 962 Query 4217 TTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAAATTGAGTGGGAGCTACAGAAA- 4275 |||||| |||||||| || ||||||| || | || ||| |||||||| |||| Sbjct 963 TTATCAGCCAGTACTCTACGCTTCAGGTCACTGTTGGAACTGATTGGGAGCT---GAAAT 1019 Query 4276 --GAAAACAGCAAACGTTGGAATCCAGAGATTCAGT 4309 ||| | |||||| | || |||||||| ||||||| Sbjct 1020 CTGAACATAGCAAAAGATGCAATCCAGAAATTCAGT 1055 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14480668188575