Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq1530899 149 2e-32 >seq1530899 Length=6551 Score = 149 bits (164), Expect = 2e-32 Identities = 239/341 (70%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 1244 GACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 ||| ||| |||| || || || |||| || |||| |||||||||||||||||| || | Sbjct 4701 GACCTGCAACCATGGGAAAAACAAACACAGCAGAGGTTATTGCCCATGCTGTGCCCTTTT 4760 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGA 1363 |||| || || |||||||| || | |||||| | || || ||||| || || ||||||| Sbjct 4761 ATGGTTGTGTGAACTGGACTAATTAAAACTTTTCTTTTAATGACTGTGTGGACAAAATGA 4820 Query 1364 TTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTC 1423 | | |||| ||||||||| |||| ||| |||| | || || | |||| | || Sbjct 4821 TCTTATGGTAGGAGGAGGGTAAAAAGACTAACAAAATTGTAGAGTCTACCAAACCTATGT 4880 Query 1424 TGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGA 1483 |||| |||||| || || || |||||||| |||| ||| || | || ||| | | Sbjct 4881 TGGG-GGATCTGCTGTTCATGTTGATCAAAAATGTAAAGATTCTGTACAAATTGAAACTA 4939 Query 1484 CGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCAT---CGACGGGAACACGA 1540 | | || || ||||| ||||| || ||||| ||||| || || || |||| | Sbjct 4940 CTCTTGTTATCATTACAAGTAATACTGACATG---TATGTTATAGGGGATGGTAACAGTA 4996 Query 1541 CCACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGttt 1581 | | ||||| || || | || |||| || | |||||| Sbjct 4997 CTAGTTTCGAACACAAACCACCACTGGAAGAATGCATGTTT 5037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14381887250175