Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq1530899 125 2e-25 >seq1530899 Length=6551 Score = 125 bits (138), Expect = 2e-25 Identities = 227/337 (67%), Gaps = 1/337 (0%) Strand=Plus/Plus Query 1356 GACCCGCGACCACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTT 1415 |||| || |||| ||||| || |||| || || | || | || | |||||||||| Sbjct 4701 GACCTGCAACCATGGGAAAAACAAACACAGCAGAGGTTATTGCCCATGCTGTGCCCTTTT 4760 Query 1416 ATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGT 1475 |||| |||||||||||||||||| | ||||| || |||||| Sbjct 4761 ATGGTTGTGTGAACTGGACTAATTAAAACTTTTCTTTTAATGACTGTGTGGACAAAATGA 4820 Query 1476 TGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCT 1535 | | |||| ||||||||| || | ||| | ||| | || || | |||| | || | Sbjct 4821 TCTTATGGTAGGAGGAGGGTAAAAAGACTAACAAAATTGTAGAGTCTACCAAACCTATGT 4880 Query 1536 TgggggggTCTAGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCTA 1595 |||||| ||| || | || ||||||||||||||| ||||||||| | || ||| Sbjct 4881 TGGGGGA-TCTGCTGTTCATGTTGATCAAAAATGTAAAGATTCTGTACAAATTGAAACTA 4939 Query 1596 CCCCGGTGATTATCACCTCCAATACTAACATGTGTGTGGTGGTGGATGGGAACTCCACGA 1655 | | || || || || |||||| |||||| ||| | | |||||| ||| || | Sbjct 4940 CTCTTGTTATCATTACAAGTAATACTGACATGTATGTTATAGGGGATGGTAACAGTACTA 4999 Query 1656 CCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGTT 1692 || |||||| | | || |||||||| ||||||| Sbjct 5000 GTTTCGAACACAAACCACCACTGGAAGAATGCATGTT 5036 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14378800345850