Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq1530899 284 4e-73 seq1892775 96.9 1e-16 >seq1530899 Length=6551 Score = 284 bits (314), Expect = 4e-73 Identities = 481/692 (70%), Gaps = 11/692 (2%) Strand=Plus/Plus Query 1204 CAACAGAGCAGCAAAGAACTATAGCAATCTGGTTGATTGGCTCATTGAGATGGGTATCAC 1263 |||||| || ||||||| || || | | || || ||||| | || | || || || Sbjct 4351 CAACAGGACAACAAAGAAATACAGTGAAGTTGTGGACTGGCTTGTAGAAAATGGCATTAC 4410 Query 1264 CTCTGAAAAACAGTGGCTAACTGAAAATAAAGAGAGCTACCGGAGCTTTCAGGCTACATC 1323 ||| || || ||||| ||| | ||||| || || | ||| |||| | || Sbjct 4411 CTCGGAGCGTCAATGGCTGCTAGAAGACAAAGAATCCTTTCGCAACTTCTAGGCAAGTTC 4470 Query 1324 TTCAAACAACAGA----CAAGTAAAAGCAGCACTTGAAAATGCCCGAGCAGAAATGCTAC 1379 ||||||| |||| ||||||| || |||||||| || | ||| |||||| Sbjct 4471 ----AACAACATCTCTTCAAGCGAAAGCAGTGCTGGAAAATGCTCGCGTAGAGGTGCTAC 4526 Query 1380 TAACAAAAACTGCCACAGACTATTTGATTGGAAAAGACCCAGTTCTGGACATTACTAAAA 1439 | | ||| | || ||||| | || || ||| ||||| |||| || || | Sbjct 4527 TGATCAAATCAGCAGAGGACTACCTCATCGGGAAACTTCCAGTAGGCGACACCACCAAGA 4586 Query 1440 ATCGGATCTATCAAATTCTGAAGTTGAATAACTATAACCCTCAATATGTAGGGAGCGTCC 1499 | ||| | |||| | | || | || | || |||||| | | ||| | | Sbjct 4587 ACAAGATATTTCAATTCTTCCAGGTAAACAGATACGACCCTCTGATGGCTGCCAGCATTC 4646 Query 1500 TATGCG-GATGGGTGAAAAGAGAATTCAACAAAAGAAATGCCATATGGCTCTACGGACCT 1558 | || | |||||| | || |||||||||| |||||||||||||| ||||| ||||| Sbjct 4647 T-TGTGAGATGGGCTCACTGATAATTCAACAAGAGAAATGCCATATGATTCTACCGACCT 4705 Query 1559 GCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCCATGCTGTACCCTTCTATGGC 1618 || |||| ||||| || |||| ||| |||| ||||||||||||||| ||||| ||||| Sbjct 4706 GCAACCATGGGAAAAACAAACACAGCAGAGGTTATTGCCCATGCTGTGCCCTTTTATGGT 4765 Query 1619 TGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACTGCGTTGATAAAATGCTTATA 1678 ||||| |||||||||||| | ||||| | ||||||||||| || || |||||| | || Sbjct 4766 TGTGTGAACTGGACTAATTAAAACTTTTCTTTTAATGACTGTGTGGACAAAATGATCTTA 4825 Query 1679 TGGTGGGAGGAGGGAAAAATGACCAATAAAGTAGTGGAATCCGCAAAAGCGATACTgggg 1738 |||| ||||||||| |||| ||| || ||| | || || || | ||| | || | ||| Sbjct 4826 TGGTAGGAGGAGGGTAAAAAGACTAACAAAATTGTAGAGTCTACCAAACCTAT-GTTGGG 4884 Query 1739 gggTCTGCTGTACGAGTTGATCAAAAGTGTAAGGGGTCTGTTTGTATTGAACCTACTCCT 1798 || |||||||| | ||||||||||| ||||| | ||||| |||||| |||||| | Sbjct 4885 GGATCTGCTGTTCATGTTGATCAAAAATGTAAAGATTCTGTACAAATTGAAACTACTCTT 4944 Query 1799 GTAATAATTACCAGTAATACTGATATGTGCATGATTGTGGATGGAAATTCTACTACAATG 1858 || || ||||| ||||||||||| |||| | || | |||||| || ||||| | Sbjct 4945 GTTATCATTACAAGTAATACTGACATGTATGTTATAGGGGATGGTAACAGTACTAGTTTC 5004 Query 1859 GAACACAGAATTCCTTTGGAGGAAAGAATGTT 1890 ||||||| | || |||| ||| | ||||| Sbjct 5005 GAACACAAACCACCACTGGAAGAATGCATGTT 5036 >seq1892775 Length=1727 Score = 96.9 bits (106), Expect = 1e-16 Identities = 130/181 (72%), Gaps = 0/181 (0%) Strand=Plus/Plus Query 4233 TGGGAGCACTACCTGGCATGGTCTGGCAGAACAGAGATATTTACCTGCAGGGTCCTATAT 4292 |||||| | |||||| || | | || |||||| ||||| || ||||| ||||| | Sbjct 750 TGGGAGTCCAACCTGGTCAAGTTTAGATGAGCAGAGACATTTATCTTCAGGGCCCTATTT 809 Query 4293 GGGCTAAAATACCCAAAACAGATGGGAAACCCCATCCTTCTCCAAACCTGGGAGGTTTTG 4352 |||||||||| || | |||||||| || || ||| ||||||| ||||||| |||| Sbjct 810 GGGCTAAAATTCCTGATACAGATGGAAATTTTCAGCCTCATCCAAACGTGGGAGGGTTTG 869 Query 4353 GTCTCCATAATCCACCTCCCCAGGTCTTTATTAAAAATACTCCTGTTCCTGCAGATCCTC 4412 || | ||||||| || | ||||| | ||||||||||| | || |||| || | Sbjct 870 GTTGTAAGCATCCACCCCCTATGATCTTTCTAAAAAATACTCCAATACCCACAGAACCAC 929 Query 4413 C 4413 | Sbjct 930 C 930 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15733951344525