Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq1530899 127 6e-26 seq1892775 114 4e-22 seq595279 100 8e-18 seq1519523 95.1 3e-16 >seq1530899 Length=6551 Score = 127 bits (140), Expect = 6e-26 Identities = 266/391 (68%), Gaps = 14/391 (4%) Strand=Plus/Plus Query 1280 CAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATCGCTCA 1339 ||||||||| |||| || | || | || || || | || ||||| | || || | Sbjct 4675 CAAGAGAAATGCCATATGATTCTACCGACCTGCAACCATGGGAAAAACAAACACAGCAGA 4734 Query 1340 AGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAACTTTCC 1399 | |||||| |||||||| | | || | |||| || ||||||||| |||||||| | Sbjct 4735 GGTTATTGCCCATGCTGTGCCCTTTTATGGTTGTGTGAACTGGACTAATTAAAACTTTTC 4794 Query 1400 CTTCTGTAACTGTCCAGGGAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGACAAACAA 1459 || | ||||| | ||| || | | |||| ||||||||| || | ||| ||||| Sbjct 4795 TTTTAATGACTGTGTGGACAAAATGATCTTATGGTAGGAGGAGGGTAAAAAGACTAACAA 4854 Query 1460 AATGGTGGAGACGGCTAAATGTATACTGGGGGGATCTGCTGTACCTGTAGACATCAAAGG 1519 ||| || ||| | | ||| ||| ||||| |||||||||| | ||| || ||| | Sbjct 4855 AATTGTAGAGTCTACCAAACCTATGTTGGGG-GATCTGCTGTTCATGTTGATCAAAAATG 4913 Query 1520 CAAACCCGCTG---AAATGTGTCCTCAAAC-ACCCT--GTATTATTACTAGCAATACTAA 1573 ||| ||| |||| | |||| || || ||| ||||| || |||||| | Sbjct 4914 TAAAGATTCTGTACAAAT------TGAAACTACTCTTGTTATCATTACAAGTAATACTGA 4967 Query 1574 CATGTGTCAAGTATATGATGGTAATAGTTCTAGCTTTGAGCACCAAGAACCCCTAGAGGA 1633 ||||| | || |||||||| ||| |||| || || ||| || ||| || || || Sbjct 4968 CATGTATGTTATAGGGGATGGTAACAGTACTAGTTTCGAACACAAACCACCACTGGAAGA 5027 Query 1634 ACGCATGTTTATGTTCAGACTTAATACTAAA 1664 | |||||||| |||| ||| || ||| |||| Sbjct 5028 ATGCATGTTTTTGTTGAGA-TTTATAGTAAA 5057 >seq1892775 Length=1727 Score = 114 bits (126), Expect = 4e-22 Identities = 120/158 (76%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 ||||||||||| | ||||| |||||||||||||||||||| ||||||||||| ||||| Sbjct 782 AGAGACATTTATCTTCAGGGCCCTATTTGGGCTAAAATTCCTGATACAGATGGAAATTTT 841 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 || ||| ||| | |||| || ||||| | || ||||| || |||||||| | | Sbjct 842 CAGCCTCATCCAAACGTGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTCTA 901 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTT 3972 |||||||| ||| | || | || || || ||| ||| Sbjct 902 AAAAATACTCCAATACCCACAGAACCACCTGCTAGCTT 939 >seq595279 Length=402 Score = 100 bits (110), Expect = 8e-18 Identities = 117/158 (74%), Gaps = 0/158 (0%) Strand=Plus/Plus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 ||||||||||| | || | |||||||||||| ||||||| |||||| || ||||||| Sbjct 186 AGAGACATTTATCTTTAGAGCCCTATTTGGGCTGAAATTCCTGATACAGGTGCACATTTT 245 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 || ||| ||| | ||||| || ||||| | || ||||| || |||||||| | | Sbjct 246 CAGCCTCATCCAAACATGGGAGGCTTTGGGTATAAGCATCCACCCCCTATGATCTTTCTA 305 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTT 3972 ||||||| ||||| || | || || || ||| ||| Sbjct 306 AAAAATATTCCAGTACCCACAGAGCCACCTGCTAGCTT 343 >seq1519523 Length=6189 Score = 95.1 bits (104), Expect = 3e-16 Identities = 149/208 (72%), Gaps = 4/208 (2%) Strand=Plus/Plus Query 2936 ATCAAAGTCTTTAACGTCCAAGTCAAAGAAGTTACA-ACACAAGATTCAACGAAAACAAT 2994 |||||| || | ||| |||||||||| || || ||| | || | || | || ||||| Sbjct 22 ATCAAAATCGTCAACATCCAAGTCAAGGAGGTCACAGAGGCAGCAGGCA-CAAAGACAAT 80 Query 2995 TGCCAACAATCTCACCAGCACCGTACAGATCTTTGCGGACGAGAACTACGACTTACCATA 3054 ||||||||| || || || |||||||||||| || |||| ||| | |||| | Sbjct 81 TGCCAACAACCTGACTTCTACAATACAGATCTTTGTAGATGAGACTTACCAACAACCACA 140 Query 3055 TGTATTAGGCAGTGCTACACAAGGCACATTTCCTCCATTTCCCA-ATGATGTATTTATGT 3113 ||| |||| | ||| || ||||| | | || ||||||| |||||| ||||||| Sbjct 141 TGTCATAGGAAATGCCACTGAAGGC-TGTATGCTGGCTTTCCCAGGTGATGTTTTTATGT 199 Query 3114 TACCACAATATGCTTATTGTACACTTCA 3141 | || || |||| ||||||||| || || Sbjct 200 TGCCTCAGTATGGTTATTGTACTCTACA 227 Score = 82.4 bits (90), Expect = 2e-12 Identities = 113/155 (73%), Gaps = 6/155 (4%) Strand=Plus/Plus Query 3817 AGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTTCA 3876 |||||| || | ||||| |||||||||| | ||||| ||||||||||||||||||| Sbjct 888 AGACATCTATCTTCAGGGTCCTATTTGGG-TCCTATTCCTTATACAGATGGACATTTTCA 946 Query 3877 TCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGA---TTCTGAT 3933 ||| | ||||| |||||||| | |||||||| | || |||| |||| | Sbjct 947 CTAACATCCTAACATGGGAGGTTTTGGCTGTAAACATCCAGCCCCCATGATCTTTCTAA- 1005 Query 3934 CAAAAATACACCAGTTCCTGCTGATCCTCCAACTA 3968 ||||||| ||||| ||| | || || ||| ||| Sbjct 1006 -AAAAATATTCCAGTACCTACAGAGCCACCAGCTA 1039 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13573118317025