Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq1530899 201 3e-48 seq1519523 82.4 2e-12 >seq1530899 Length=6551 Score = 201 bits (222), Expect = 3e-48 Identities = 266/368 (72%), Gaps = 1/368 (0%) Strand=Plus/Plus Query 1316 TTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATC 1375 ||||||||||| || || | || ||||| |||| || || | || || || |||| Sbjct 4670 TTCAACAAGAGAAATGCCATATGATTCTACCGACCTGCAACCATGGGAAAAACAAACACA 4729 Query 1376 GCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAAC 1435 || |||| || ||||| ||||||||||||| || || ||||||||||| ||| ||||| Sbjct 4730 GCAGAGGTTATTGCCCATGCTGTGCCCTTTTATGGTTGTGTGAACTGGACTAATTAAAAC 4789 Query 1436 TTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACC 1495 ||| | |||||||||||||||||||||||| || | |||| ||||||||| || | ||| Sbjct 4790 TTTTCTTTTAATGACTGTGTGGACAAAATGATCTTATGGTAGGAGGAGGGTAAAAAGACT 4849 Query 1496 AACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAG 1555 ||||| | || || || |||| | || | ||||| || || | || ||||| Sbjct 4850 AACAAAATTGTAGAGTCTACCAAACCTAT-GTTGGGGGATCTGCTGTTCATGTTGATCAA 4908 Query 1556 AAATGTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAAC 1615 ||||||||| ||||| |||||||| |||| | ||| || | || ||||| || Sbjct 4909 AAATGTAAAGATTCTGTACAAATTGAAACTACTCTTGTTATCATTACAAGTAATACTGAC 4968 Query 1616 ATGTGTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGAC 1675 |||| ||| | | |||||| || || | || |||||| | | || ||||| || Sbjct 4969 ATGTATGTTATAGGGGATGGTAACAGTACTAGTTTCGAACACAAACCACCACTGGAAGAA 5028 Query 1676 CGCATGTT 1683 ||||||| Sbjct 5029 TGCATGTT 5036 >seq1519523 Length=6189 Score = 82.4 bits (90), Expect = 2e-12 Identities = 206/305 (68%), Gaps = 12/305 (4%) Strand=Plus/Plus Query 3117 TCAAAATCTTCAACATTCAAGTCAAAGAGGTCACGGTG-CAGGACTCCACCACNNNNATC 3175 |||||||| ||||||| |||||||| |||||||| | | ||| | | || | || Sbjct 23 TCAAAATCGTCAACATCCAAGTCAAGGAGGTCACAGAGGCAGCAGGC-ACAAAGACAATT 81 Query 3176 GCCAACAACCTCACCTCCACCGTCCAAGTGTTTACGGACGACGAC-TACCAGCTGCCCTA 3234 ||||||||||| || || || | || | ||| || || ||| ||||| | || | Sbjct 82 GCCAACAACCTGACTTCTACAATACAGATCTTTGTAGATGA-GACTTACCAACAACCACA 140 Query 3235 CGTCGTCGGCAACGGGACCGAGGGATGCCTGCCGGCCTTCCCTCCGCAGGTCTTTACGCT 3294 ||| | || || | || || || || ||| ||| ||||| | || |||| | | Sbjct 141 TGTCATAGGAAATGCCACTGAAGGCTGTATGCTGGCTTTCCCAGGTGATGTTTTTATGTT 200 Query 3295 GCCGCAGTACGGTTACGCGACGCT---GAACCGCGACAACACAGAAAAT---CCCACCGA 3348 ||| ||||| ||||| || || |||||| | || ||| | | | ||||| | Sbjct 201 GCCTCAGTATGGTTATTGTACTCTACATAACCGCAATAATACAAACACTACCCCCACTGC 260 Query 3349 GAGGAGCAGCTTCTT-CTGCCTAGAGTACTTTCCCAGCAAGATGCTGAGAACGGGCAACA 3407 ||| | |||| || || || || || |||||||| | ||| |||||||||| || | Sbjct 261 AAGG-TCTGCTTTTTATTGTCTGGAATATTTTCCCAGTCAAATGTTGAGAACGGGTAATA 319 Query 3408 ACTTT 3412 ||||| Sbjct 320 ACTTT 324 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14221368225275