Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq1530899 143 8e-31 >seq1530899 Length=6551 Score = 143 bits (158), Expect = 8e-31 Identities = 238/341 (70%), Gaps = 7/341 (2%) Strand=Plus/Plus Query 1244 GACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCT 1303 ||||||| |||| || || || |||| || |||| |||||||||||||||||| || | Sbjct 4701 GACCTGCAACCATGGGAAAAACAAACACAGCAGAGGTTATTGCCCATGCTGTGCCCTTTT 4760 Query 1304 ATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGA 1363 |||| || || |||||||| || | |||||| | || || ||||| || || || |||| Sbjct 4761 ATGGTTGTGTGAACTGGACTAATTAAAACTTTTCTTTTAATGACTGTGTGGACAAAATGA 4820 Query 1364 TTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTC 1423 | | |||| ||| ||||| |||| ||| ||| | || || | | ||| | || Sbjct 4821 TCTTATGGTAGGAGGAGGGTAAAAAGACTAACAAAATTGTAGAGTCTACCAAACCTATGT 4880 Query 1424 TGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGA 1483 |||| |||||| || || || |||||||| |||| ||| || | || ||| | | Sbjct 4881 TGGG-GGATCTGCTGTTCATGTTGATCAAAAATGTAAAGATTCTGTACAAATTGAAACTA 4939 Query 1484 CGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCAT---CGACGGGAACACGA 1540 | | || || ||||| ||||| || ||||| ||||| || || || |||| | Sbjct 4940 CTCTTGTTATCATTACAAGTAATACTGACATG---TATGTTATAGGGGATGGTAACAGTA 4996 Query 1541 CTACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGttt 1581 ||| ||||| || || | || |||| || | |||||| Sbjct 4997 CTAGTTTCGAACACAAACCACCACTGGAAGAATGCATGTTT 5037 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14344844398275