Alignment viewer
BLASTN 2.6.0+
Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A.
Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J.
Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of
protein database search programs", Nucleic Acids Res. 25:3389-3402.
Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012
-01-05] 3,231,305 sequences; 2,855,365,987 total letters
Query= NC_027429.1
Length=4590
Score E
Sequences producing significant alignments: (Bits) Value
seq1530899 150 5e-33
seq1892775 100 8e-18
>seq1530899
Length=6551
Score = 150 bits (166), Expect = 5e-33
Identities = 351/523 (67%), Gaps = 5/523 (1%)
Strand=Plus/Plus
Query 1277 AACGGATACGACCCTCTCCTGGCTGCCAACATCTTTAACGGTTGGTTGAACAAGGAATAC 1336
||| ||||||||||||| ||||||||| ||| || | ||| || ||| |
Sbjct 4613 AACAGATACGACCCTCTGATGGCTGCCAGCATTCTTGTGAGATGGGCTCACTGATAATTC 4672
Query 1337 GGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCG 1396
|| || ||| |||| || ||||| |||| || |||| ||||| || | | |||
Sbjct 4673 AACAAGAGAAATGCCATATGATTCTACCGACCTGCAACCATGGGAAAAACAAACACAGCA 4732
Query 1397 CAAGCTATAGCCCACGGTGCTGTCCTCTT-TGGAGGAGTCAATTGGACTAATGAAAACTT 1455
| | ||| ||||| | || || ||| || ||| | || || ||||||||| |||||||
Sbjct 4733 GAGGTTATTGCCCATGCTG-TGCCCTTTTATGGTTGTGTGAACTGGACTAATTAAAACTT 4791
Query 1456 TCCCTTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACA 1515
| | ||| | | ||| | ||| || | |||||| ||| |||||||||| ||| |
Sbjct 4792 TTCTTTTAATGACTGTGTGGACAAAATGATCTTATGGTAGGAGGAGGGTAAAAAGACTAA 4851
Query 1516 AAAGATGGTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGATATCAA 1575
|| || || || | ||||| ||| || || | | ||| ||| | ||| ||| ||
Sbjct 4852 CAAAATTGTAGAGTCTACCAAACCTATGTTGGGGGAT-CTGCTGTTCATGTTGATCAAAA 4910
Query 1576 AGGCAAAATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACAT 1635
| | ||| ||| || |||||| || | ||| || ||||| |||||||| ||||
Sbjct 4911 ATGTAAAGATTCTGTACAAATTGAAACTACTCTTGTTATCATTACAAGTAATACTGACAT 4970
Query 1636 GTGTCAGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAG 1695
|| | | ||||||||||||| ||||| ||||| | ||| | |||||| |
Sbjct 4971 GTATGTTATAGGGGATGGTAACAGTACTAGTTTCGAACACAAACCACCACTGGAAGAATG 5030
Query 1696 AATGTTTATGTTTAGGTTGAATAAGAAACTGGA-ACCTGATTTTGGAAAAGTGACCTTGG 1754
|||||| |||| || || ||| ||| | || || ||| ||||| ||| | | |
Sbjct 5031 CATGTTTTTGTTGAGATT-TATAGTAAAATTGAGACATGACTTTGGTAAAATTAATAAGT 5089
Query 1755 ACGAAGTCAAAGAATTTATTACCTGGGGTAGAGATAATCCAGT 1797
||||| | |||||| ||| ||||| | || ||| || ||
Sbjct 5090 GGGAAGTTAGAGAATTCTTTAGATGGGGCATAGTTAACCCCGT 5132
>seq1892775
Length=1727
Score = 100 bits (110), Expect = 8e-18
Identities = 193/281 (69%), Gaps = 8/281 (3%)
Strand=Plus/Plus
Query 3882 CAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACTT 3941
|||||| ||||| || || || || || ||||||||||| || ||||| |||||| | ||
Sbjct 781 CAGAGACATTTATCTTCAGGGCCCTATTTGGGCTAAAATTCCTGATACAGATGGAAATTT 840
Query 3942 TCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCAT 4001
||| || |||| | |||| || || || ||| | ||||| || |||||| | |
Sbjct 841 TCAGCCTCATCCAAACGTGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTCT 900
Query 4002 CAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACAG 4061
||||| || || | ||| | || ||||| | | ||| | | | |||| || ||
Sbjct 901 AAAAAATACTCCAATACCCACAGAACCACCTGCTAGCTTTACAGAGTCTCCTATTAAGTC 960
Query 4062 CTTCATCAGCGAATACAGTACCGGTCAGGTGACTG-TAGAGATGCTGTGGGAGGTCCGGA 4120
|| |||||| | ||| ||| |||||| |||| | || || | |||||| | ||
Sbjct 961 TTTTATCAGCCAGTACTCTACGCTTCAGGTCACTGTTGGAACTGAT-TGGGAG---CTGA 1016
Query 4121 AA---GAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTT 4158
|| ||| | ||| ||||| || || ||||| ||||||
Sbjct 1017 AATCTGAACATAGCAAAAGATGCAATCCAGAAATTCAGTTT 1057
Lambda K H
0.634 0.408 0.912
Gapped
Lambda K H
0.625 0.410 0.780
Effective search space used: 14060849200375
Made in 2017 by Kirill Kryukov This page is placed in public domain using CC0 |