Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Daubentonia_20madagascariensis_20[genbank_20GCA_5F000241425.1_202012 -01-05] 3,231,305 sequences; 2,855,365,987 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq1530899 150 5e-33 seq1892775 100 8e-18 >seq1530899 Length=6551 Score = 150 bits (166), Expect = 5e-33 Identities = 351/523 (67%), Gaps = 5/523 (1%) Strand=Plus/Plus Query 1277 AACGGATACGACCCTCTCCTGGCTGCCAACATCTTTAACGGTTGGTTGAACAAGGAATAC 1336 ||| ||||||||||||| ||||||||| ||| || | ||| || ||| | Sbjct 4613 AACAGATACGACCCTCTGATGGCTGCCAGCATTCTTGTGAGATGGGCTCACTGATAATTC 4672 Query 1337 GGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACTATTATAGCG 1396 || || ||| |||| || ||||| |||| || |||| ||||| || | | ||| Sbjct 4673 AACAAGAGAAATGCCATATGATTCTACCGACCTGCAACCATGGGAAAAACAAACACAGCA 4732 Query 1397 CAAGCTATAGCCCACGGTGCTGTCCTCTT-TGGAGGAGTCAATTGGACTAATGAAAACTT 1455 | | ||| ||||| | || || ||| || ||| | || || ||||||||| ||||||| Sbjct 4733 GAGGTTATTGCCCATGCTG-TGCCCTTTTATGGTTGTGTGAACTGGACTAATTAAAACTT 4791 Query 1456 TCCCTTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTAAAATGACACA 1515 | | ||| | | ||| | ||| || | |||||| ||| |||||||||| ||| | Sbjct 4792 TTCTTTTAATGACTGTGTGGACAAAATGATCTTATGGTAGGAGGAGGGTAAAAAGACTAA 4851 Query 1516 AAAGATGGTCGAAACCGCCAAATGTATATTAGGCGGTGCTGTTGTACCTGTGGATATCAA 1575 || || || || | ||||| ||| || || | | ||| ||| | ||| ||| || Sbjct 4852 CAAAATTGTAGAGTCTACCAAACCTATGTTGGGGGAT-CTGCTGTTCATGTTGATCAAAA 4910 Query 1576 AGGCAAAATGGCTGAACTGTGTGAAACCACCCCTGTCATTATTACCAGTAATACCAACAT 1635 | | ||| ||| || |||||| || | ||| || ||||| |||||||| |||| Sbjct 4911 ATGTAAAGATTCTGTACAAATTGAAACTACTCTTGTTATCATTACAAGTAATACTGACAT 4970 Query 1636 GTGTCAGGTCTTTGATGGTAACAGTAGCAGTTTTGAACATACCGAACCCTTAGAAGAAAG 1695 || | | ||||||||||||| ||||| ||||| | ||| | |||||| | Sbjct 4971 GTATGTTATAGGGGATGGTAACAGTACTAGTTTCGAACACAAACCACCACTGGAAGAATG 5030 Query 1696 AATGTTTATGTTTAGGTTGAATAAGAAACTGGA-ACCTGATTTTGGAAAAGTGACCTTGG 1754 |||||| |||| || || ||| ||| | || || ||| ||||| ||| | | | Sbjct 5031 CATGTTTTTGTTGAGATT-TATAGTAAAATTGAGACATGACTTTGGTAAAATTAATAAGT 5089 Query 1755 ACGAAGTCAAAGAATTTATTACCTGGGGTAGAGATAATCCAGT 1797 ||||| | |||||| ||| ||||| | || ||| || || Sbjct 5090 GGGAAGTTAGAGAATTCTTTAGATGGGGCATAGTTAACCCCGT 5132 >seq1892775 Length=1727 Score = 100 bits (110), Expect = 8e-18 Identities = 193/281 (69%), Gaps = 8/281 (3%) Strand=Plus/Plus Query 3882 CAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACTT 3941 |||||| ||||| || || || || || ||||||||||| || ||||| |||||| | || Sbjct 781 CAGAGACATTTATCTTCAGGGCCCTATTTGGGCTAAAATTCCTGATACAGATGGAAATTT 840 Query 3942 TCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCAT 4001 ||| || |||| | |||| || || || ||| | ||||| || |||||| | | Sbjct 841 TCAGCCTCATCCAAACGTGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTCT 900 Query 4002 CAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACAG 4061 ||||| || || | ||| | || ||||| | | ||| | | | |||| || || Sbjct 901 AAAAAATACTCCAATACCCACAGAACCACCTGCTAGCTTTACAGAGTCTCCTATTAAGTC 960 Query 4062 CTTCATCAGCGAATACAGTACCGGTCAGGTGACTG-TAGAGATGCTGTGGGAGGTCCGGA 4120 || |||||| | ||| ||| |||||| |||| | || || | |||||| | || Sbjct 961 TTTTATCAGCCAGTACTCTACGCTTCAGGTCACTGTTGGAACTGAT-TGGGAG---CTGA 1016 Query 4121 AA---GAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTT 4158 || ||| | ||| ||||| || || ||||| |||||| Sbjct 1017 AATCTGAACATAGCAAAAGATGCAATCCAGAAATTCAGTTT 1057 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14060849200375