Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq5313 464 2e-127 >seq5313 Length=180025 Score = 464 bits (514), Expect = 2e-127 Identities = 683/959 (71%), Gaps = 46/959 (5%) Strand=Plus/Minus Query 782 CTACCTGCTCCCCAAGACCCAGCCCGAGCTCCAGTGGGCGTGGACTAACATGGACCAG-- 839 ||| ||||| |||||| ||| | ||||| |||||||||||||||||| || |||| Sbjct 142404 CTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAACCTG--CCAGAC 142347 Query 840 TATTTAAGCGCCTGTTTGAATCTCGCGGAGCGTAAACGGCTGGTGGCGCAGCATCTGAC- 898 ||| ||||||| | ||||||| ||| || |||||||||||| | | ||||| Sbjct 142346 TATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTGT-TCTGAGA 142288 Query 899 GCACGTGT-CGC-AGA-CGCAGGAGC------------------AGAACAAAGAGAATCA 937 ||| || ||| || ||| ||||| || ||||||| ||| Sbjct 142287 GCAGTTGCGCGCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAAAGAAAATTT 142228 Query 938 GAACCCCAATTCTGACGCGCCGGTCATCAGGTCAAAAACCTCAGCCAGGTACATGGAGCT 997 | |||| ||| || || ||| ||| | | || | ||||||||||| Sbjct 142227 GGACCCGAATCCTA--------GTTGGAAGGG-AAAGGCGACCGCGAAATACATGGAGCT 142177 Query 998 GGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATTCAGGAGGACCA 1057 |||| ||| ||||||| |||||||| || || | ||||| | |||||||| Sbjct 142176 GGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGACCA 142117 Query 1058 GGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCT 1117 | || ||| ||||||||||| | | || || || ||||| ||||| || || Sbjct 142116 AGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTGCCCT 142057 Query 1118 GGACAATGCCTCCAAGATCATGAGCCTGACAA---AGACGGCTCCGGACTACCTGGTGGG 1174 |||||| || | |||||| |||||| || ||| | |||||||| | || Sbjct 142056 GGACAACGCAGGCCGCATCATGG---TGACAACTAAGTTGGCCGCCGACTACCTAATCGG 142000 Query 1175 CAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATCCTGGAGCTGAACGG 1234 | || ||| || ||||| ||| ||| || |||||| ||| | || ||||| || Sbjct 141999 CCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGG 141940 Query 1235 GTACGATCCGCAGTACGCGGCCTCCGTCTTCCTG--GGCTGGGCGCAAAAGAAGTTCGGG 1292 ||| |||| ||||||| | |||||| | |||||| | ||| ||| ||| Sbjct 141939 CTACTATCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACGGC 141882 Query 1293 AAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAA 1352 ||| |||||||||||||||| ||||| || || || || || || |||||||||||||| Sbjct 141881 AAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAG 141822 Query 1353 GCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAACTTTCCC 1412 |||||||| || || || || |||||| ||||||| ||||||||||| ||||||||||| Sbjct 141821 GCCATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCT 141762 Query 1413 TTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAG 1472 ||||| || || || ||||| ||||||||||||||||||||||| ||||||||||||||| Sbjct 141761 TTCAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAG 141702 Query 1473 GTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGC 1532 || || || || |||||||| ||||| || | |||| | || ||||| || || Sbjct 141701 GTGGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGT 141642 Query 1533 AAGTCATCGGCCCAGATCGAACCCACTCCCGTGATCGTCACCTCCAACACCAACATGTGC 1592 ||| | | | ||||| || | || || || |||||||||||||||||||||||||| Sbjct 141641 AAGGCCTTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGTGT 141582 Query 1593 GCCGTGATTGACGGGAACAGCACCACCTTCGAGCATCAGCAGCCGCTGCAGGACCGGATG 1652 || || || ||||| || |||||| ||||||||||||||||| ||| |||| |||||| Sbjct 141581 GCGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATG 141522 Query 1653 TTTGAATTTGAACTTACCCGCCGTTTGGACCATGACTTTGGGAAGGTCACCAAACAGGA 1711 || |||||||||| |||| | | | |||||||||||||| || ||||| |||| Sbjct 141521 TTCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGGA 141463 Score = 172 bits (190), Expect = 2e-39 Identities = 220/302 (73%), Gaps = 1/302 (0%) Strand=Plus/Minus Query 2302 CCCAAAGCGAACCAACAACACCAGGACAACCGTCGGGGTCTTGTGCTTCCGGGTTACAAA 2361 ||||| | |||||| || ||||||||| | || || || || |||| |||||||| Sbjct 140827 CCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTGGTTACAAG 140768 Query 2362 TACCTCGGACCCGGTAACGGACTCGACAAAGGAGAGCCGGTCAACGAGGCGGACGCGGCA 2421 || || || || |||||| || ||||| || || || ||||| | || ||| ||| Sbjct 140767 TATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCAACGAGGCT 140708 Query 2422 GCCCTCGAACACGACAAAGCTTACGACCAGCAGCTCAAGGCCGGTGACAACCCGTACCTC 2481 || ||| |||||||| || ||||| ||||||||||||| || || ||||| |||||| Sbjct 140707 GCTCTCCG-CACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACCCCTACCTC 140649 Query 2482 AAGTACAACCACGCCGACGCCGAGTTTCAGGAGCGTCTTCAAGAAGATACGTCTTTTGGG 2541 || ||||| ||||| ||||| ||||||||| || | || |||| || | || | | | Sbjct 140648 AAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCTCCCTAGCG 140589 Query 2542 GGCAACCTTGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGATCCTTGAGCCTCTTGGTCTG 2601 || ||| | | || | ||||||| ||| ||| || || | ||||| ||||||||| Sbjct 140588 GGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCCTTGGTCTG 140529 Query 2602 GT 2603 || Sbjct 140528 GT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15004900714105