Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq5313 480 2e-132 >seq5313 Length=180025 Score = 480 bits (532), Expect = 2e-132 Identities = 688/955 (72%), Gaps = 38/955 (4%) Strand=Plus/Minus Query 836 CTACCTGCTCCCCAAGACCCAGCCCGAGCTCCAGTGGGCGTGGACTAACATGGACCAG-- 893 ||| ||||| |||||| ||| | ||||| |||||||||||||||||| || |||| Sbjct 142404 CTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAACCTG--CCAGAC 142347 Query 894 TATATAAGCGCCTGTTTGAATCTCGCGGAGCGTAAACGGCTGGTGGCGCAGCATCTGAC- 952 ||||||||||| | ||||||| ||| || |||||||||||| | | ||||| Sbjct 142346 TATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTGT-TCTGAGA 142288 Query 953 GCACGTGT-CGC-AGA-CGCAGGAGC---------AGAACAAGGAAAACCA-GAACCCCA 999 ||| || ||| || ||| ||||| || | |||| || | ||| | Sbjct 142287 GCAGTTGCGCGCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAAAGAA----A 142232 Query 1000 ATTCTGACGCG----CCGGTCATCAGGTCAAAAACCTCCGCCAGGTACATGGAGCTGGTC 1055 ||| ||| || | || ||| ||| | |||| | ||||||||||||||| Sbjct 142231 ATTTGGACCCGAATCCTAGTTGGAAGGG-AAAGGCGACCGCGAAATACATGGAGCTGGTC 142173 Query 1056 GGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCG 1115 ||| ||||||| |||||||| || || | ||||||| |||||||| | | Sbjct 142172 AAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGACCAAGAG 142113 Query 1116 TCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATCAAGGCCGCGCTGGAC 1175 |||||| ||||||||||| | | || || || || || ||||| || |||||| Sbjct 142112 TCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTGCCCTGGAC 142053 Query 1176 AATGCCTCCAAAATCATGAGCCTGACAA---AGACGGCTCCGGACTACCTGGTGGGCCAG 1232 || || | |||||| |||||| || ||| | |||||||| | |||| Sbjct 142052 AACGCAGGCCGCATCATGG---TGACAACTAAGTTGGCCGCCGACTACCTAATCGGCCGC 141996 Query 1233 AACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAGATGAACGGGTAC 1292 ||| || ||||| || | ||||| ||||||| ||| |||| |||| || ||| Sbjct 141995 GTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGGCTAC 141936 Query 1293 GATCCGCAGTACGCGGCCTCCGTCTTCCTG--GGCTGGGCGCAAAAGAAGTTCGGGAAGA 1350 |||| ||||||| | |||||| | |||||| | ||| ||| ||| ||| Sbjct 141935 TATCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACGGCAAGC 141878 Query 1351 GGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCA 1410 |||||||||||||||| ||||| || || || || || || |||||||||||||| |||| Sbjct 141877 GGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGCCA 141818 Query 1411 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTCA 1470 |||| || || || || |||||| ||||||| ||||||||||| ||||||||||| |||| Sbjct 141817 TCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTTCA 141758 Query 1471 ACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1530 | || || || ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct 141757 ATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGG 141698 Query 1531 TAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGT 1590 | || || |||||||||||||| || | |||| | || ||||| || || ||| Sbjct 141697 TCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAAGG 141638 Query 1591 CATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCGG 1650 | | | ||||| |||| || || || |||||||||||||||||||||||||| |||| Sbjct 141637 CCTTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGTGTGCGG 141578 Query 1651 TCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGACCGGATGTTCA 1710 ||||||||||||| | ||||| |||||||| || || || || |||| |||||||||| Sbjct 141577 TCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGTTCA 141518 Query 1711 AGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCAAGCAGGA 1765 | || || |||||| | | || | || |||||||| || || |||| |||| Sbjct 141517 AATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGGA 141463 Score = 217 bits (240), Expect = 4e-53 Identities = 235/310 (76%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 2342 CCCCTAAACCCAAGGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGG 2401 |||| || ||||||| || || || || |||||| | || || || || || |||| | Sbjct 140835 CCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTG 140776 Query 2402 GTTACAAATACCTCGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGG 2461 ||||||| || || || || ||||| || |||||||||||||||||||| ||| Sbjct 140775 GTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCA 140716 Query 2462 ACGCGGCAGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACC 2521 ||| ||| || ||| |||||||||||| ||||| ||||||||||||| || || |||| Sbjct 140715 ACGAGGCTGCTCTCC-GCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACC 140657 Query 2522 CCTACCTCAAGTACAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACAT 2581 |||||||||| ||||| ||||| ||||||||||| |||||| | || || ||||||| | Sbjct 140656 CCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCT 140597 Query 2582 CGTTTGGGGGCAACCTCGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTC 2641 | | | ||| ||| || | || | ||||||| ||| ||| |||| | || || | Sbjct 140596 CCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCC 140537 Query 2642 TTGGTCTGGT 2651 |||||||||| Sbjct 140536 TTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15136045657460