Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq5313 513 4e-142 >seq5313 Length=180025 Score = 513 bits (568), Expect = 4e-142 Identities = 547/720 (76%), Gaps = 4/720 (1%) Strand=Plus/Minus Query 996 CCGCGCGCTACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGC 1055 ||||| ||||||||||||||| ||| ||||||| ||| |||||||| ||| Sbjct 142195 CCGCGAAATACATGGAGCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAG 142136 Query 1056 AGTGGATCCAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCTTCCAACTCGCGGT 1115 ||||||||| |||||||| | || ||| ||||||||||| | | || || || Sbjct 142135 AGTGGATCCGCGAGGACCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGG 142076 Query 1116 CCCAGATCAAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGC 1175 ||||| ||||| || |||||||| || ||| ||||||| | || || | || Sbjct 142075 GGCAGATTAAGGCTGCCCTGGACAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCG 142016 Query 1176 CCGACTACCTGGTAGGCCCCGCTCCGCCCGCGGACATTAAAACCAACCGCATCTACCGCA 1235 |||||||||| | |||| || ||||| ||||| | ||||| ||||||| | Sbjct 142015 CCGACTACCTAATCGGCCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGA 141956 Query 1236 TCCTGGAGCTGAACGGCTACGAACCTGCCTACGCCGGCTCCGTCTTTC--TCGGCTGGGC 1293 || | || ||||| |||||| | || |||||||| ||||| |||||||| Sbjct 141955 TCTTCGACCTGAATGGCTACTATCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTG 141898 Query 1294 CCAGAAAAGGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAA 1353 || ||| || ||| ||||| |||||||||||||||||||| || || || || || || Sbjct 141897 CCGGAAGGAGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAA 141838 Query 1354 GACCAACATCGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGAC 1413 ||||||||||||||| |||||||| || || || || |||||| |||||||||||||||| Sbjct 141837 GACCAACATCGCGGAGGCCATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGAC 141778 Query 1414 CAATGAGAACTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGG 1473 ||| ||||||||||| |||||||| || || ||||| ||||||||||||||||||||||| Sbjct 141777 CAACGAGAACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGG 141718 Query 1474 CAAGATGACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCG 1533 ||||||||||||||||| || |||| || |||||||| || || ||| | |||| | Sbjct 141717 TAAGATGACGGCCAAGGTGGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAG 141658 Query 1534 CGTGGACCAAAAGTGCAAGTCGTCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTC 1593 || ||||| || || ||| | | ||||| |||| || || || ||||||||||| Sbjct 141657 AGTCGACCAGAAATGTAAGGCCTTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTC 141598 Query 1594 CAACACCAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCC 1653 ||||||||||||||| || || || ||||| || |||||| |||||||| |||||||| Sbjct 141597 CAACACCAACATGTGTGCGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCC 141538 Query 1654 GTTGCAGGACCGGATGTTCAAATTTGAACTCACCCGCCGTCTGGAGCATGACTTTGGCAA 1713 || |||| ||||||||||||||||||||||||| | || | ||||||||||| || Sbjct 141537 CCTGGAGGATCGGATGTTCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAA 141478 Score = 181 bits (200), Expect = 3e-42 Identities = 227/310 (73%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 2308 CCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTG 2367 ||||||||||||| | |||||||| | |||||| | | ||| || || || |||||| Sbjct 140835 CCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTG 140776 Query 2368 GCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGG 2427 | |||||||| || || || || ||||| || ||||||||||| |||||||| || Sbjct 140775 GTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCA 140716 Query 2428 ACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATC 2487 ||| || || ||| |||||||||||| ||||| |||||||||| || || || || | Sbjct 140715 ACGAGGCTGCTCTC-CGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACC 140657 Query 2488 CGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGT 2547 | ||||| || || ||||| ||||| ||||||||| || | || |||| || | | Sbjct 140656 CCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCT 140597 Query 2548 CTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTC 2607 | | | ||| ||| || || | ||||||| |||||||||||| | || || | Sbjct 140596 CCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCC 140537 Query 2608 TCGGTCTGGT 2617 | |||||||| Sbjct 140536 TTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14979311456865