Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq5313 372 9e-100 >seq5313 Length=180025 Score = 372 bits (412), Expect = 9e-100 Identities = 394/518 (76%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 1129 AACCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATT 1188 ||||| ||||| ||| | || ||||| |||| | || ||||| || ||| || Sbjct 141971 AACCGTGTCTACCGGATCTTCGACCTGAATGGCTACTATCCCAAGTACGCCGGAAGTCTT 141912 Query 1189 TTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACAT 1248 ||||||| ||||||| |||| | | |||||||| ||||| | |||||||| |||| Sbjct 141911 CTGGTCGGCTGGTGCCGGAAGGAGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCC 141852 Query 1249 GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGA 1308 ||||| ||||| |||||||||||||||||||| || || ||||| || |||||||| | Sbjct 141851 GCGACTACCGGAAAGACCAACATCGCGGAGGCCATCGCGCATGCGGTCCCGTTCTACAGC 141792 Query 1309 TGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATC 1368 ||||| ||||||||||||||||||||||| ||||| ||||| || || |||||| | ||| Sbjct 141791 TGCGTCAACTGGACCAACGAGAACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATC 141732 Query 1369 TGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGGA 1428 |||||||||||||| || ||||| ||||| ||||| | | || ||||| || |||||| Sbjct 141731 TGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGGTCCAGTCTGCAAAGGCCATCCTGGGA 141672 Query 1429 GGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCG 1488 || || ||||||||| ||||| ||||| || || | | | ||| || | ||||||| Sbjct 141671 GGCTCAATGGTGAGAGTCGACCAGAAATGTAAGGCCTTGCAGCAGATTGACCAGACGCCG 141612 Query 1489 GTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTTC 1548 ||||| | ||| ||||||||||||||| ||||||||||| || | ||||||||| Sbjct 141611 GTCATCGTCACCTCCAACACCAACATGTGTGCGGTCATCGACGGAAATGCCACCACGTTC 141552 Query 1549 GAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAATTGCTGAC---TCGGTTG 1605 |||||| ||||||| ||||||| ||||||| || | ||| || || | | | Sbjct 141551 GAGCATCAGCAGCCCCTGGAGGATCGGATGTTCAAATTTGAA---CTCACCCATAGACTC 141495 Query 1606 CCTGATGACTTTGGTAAGGTGACCAAACAGGAGGTGCG 1643 | |||||||||| || | ||||| ||||| |||| Sbjct 141494 AATCATGACTTTGGGAAAATCTCCAAAGAGGAGATGCG 141457 Score = 104 bits (114), Expect = 7e-19 Identities = 188/270 (70%), Gaps = 5/270 (2%) Strand=Plus/Minus Query 2404 GAGGTCTCGTGTTCCCAGGCTACAATTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAG 2463 |||| ||||| | || || ||||| |||||||||||||| ||||||||||| || || | Sbjct 140793 GAGGGCTCGTTGTTCCTGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGG 140734 Query 2464 AACCCGTCAACGAGGCAGACGCTGCCGC-CTTAGAACACGACAAGGCTTACGACCTCGAA 2522 |||||||||| | || ||| || || || | ||||||||||| ||||| | Sbjct 140733 AACCCGTCAATAAAGCCAACGAGGCTGCTCTCCG--CACGACAAGGCATACGAAGAGCAG 140676 Query 2523 ATCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGAC-AGACGTTTCCAGGA 2581 |||||| || | ||||| ||| | | ||||| | || ||| | |||| ||| | Sbjct 140675 CTCAAGGCAGGCGATAACCCCTACCTCAAATACAATCACGCGGACGCGGAGTTT-CAGCA 140617 Query 2582 ACGTCTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGCCATCTTCCAGGCCAA 2641 | ||| ||| ||| | |||| | | || || | || || | ||||||| ||| Sbjct 140616 GAGACTCCAAGGCGACAGCTCCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAA 140557 Query 2642 AAAGAGGGTTCTCGAACCCTTTGGTCTGGT 2671 ||| |||| | || ||| |||||||||| Sbjct 140556 GAAGCGGGTCTTAGAGCCCCTTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14902543685145