Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq5313 383 5e-103 >seq5313 Length=180025 Score = 383 bits (424), Expect = 5e-103 Identities = 695/1015 (68%), Gaps = 25/1015 (2%) Strand=Plus/Minus Query 812 TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAAC 871 ||| | | |||||| |||||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 142415 TATGTGCACGCCTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAAC 142356 Query 872 CTCGAAGAGTATAAATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAG 931 || ||| |||| | || ||||||||||| ||||| ||||||||||| || || | Sbjct 142355 CTGCCAGACTATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTG 142296 Query 932 TT-TCAGCTTGAGTCCTCGCAGCGCTCGCAAGAG-----GCATCT-TCCCAGAGGGACGT 984 || | || | | ||| |||||| ||| || || |||||| |||| Sbjct 142295 TTCTGAGAGCAGTTGCGCGCTA-GCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAA 142237 Query 985 ------TTCGGCTGACCCGG-TCATC-----AAGAGCAAGACTTCCCAGAAATACATGGC 1032 || || ||||| || | ||| | ||| | || ||||||||||| Sbjct 142236 AGAAAATTTGG---ACCCGAATCCTAGTTGGAAGGGAAAGGCGACCGCGAAATACATGGA 142180 Query 1033 GCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAA 1092 |||||| | ||| ||||||| | || ||||| || ||| ||||||| | ||| | Sbjct 142179 GCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGA 142120 Query 1093 TCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGC 1152 || ||| |||||| ||||||||||| ||||| | | || | |||||||| || || Sbjct 142119 CCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTGC 142060 Query 1153 GCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACTATCTCGTGGG 1212 || |||||||| || ||| || || | ||| | ||||| || | || Sbjct 142059 CCTGGACAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCGCCGACTACCTAATCGG 142000 Query 1213 ACAGACTGTTCCAGAGGACATTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGG 1272 | || || || ||||| | | |||| | ||| | ||| || || || || || Sbjct 141999 CCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGG 141940 Query 1273 CTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAA 1332 |||| | || ||||| || | |||| |||||||||| | | || || Sbjct 141939 CTACTATCCCAAGTACGCCGGAAGTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACGGCAA 141880 Query 1333 GAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGC 1392 | |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| || Sbjct 141879 GCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGC 141820 Query 1393 CATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNN 1452 |||| | || | || || || || |||| || |||||||| || |||||||| Sbjct 141819 CATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTT 141760 Query 1453 NNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGT 1512 || |||||| ||||||||||||||||||| |||||||| |||||| Sbjct 141759 CAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGT 141700 Query 1513 GGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAA 1572 ||| | | || ||||||||| |||| || || | || |||| || || |||||||| Sbjct 141699 GGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAA 141640 Query 1573 ATCCTCTGTACAAG-TAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTG 1631 ||| || | || | ||| || ||||| || |||||||||| || |||||||||| Sbjct 141639 GGCCT-TGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGTGTG 141581 Query 1632 TGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGT 1691 ||| | || || || |||| || || || || |||||||| ||||| || || |||| Sbjct 141580 CGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGT 141521 Query 1692 TCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAG 1751 ||| ||||||||||| | | ||| | || ||||| || || |||| |||| Sbjct 141520 TCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGGAGA 141461 Query 1752 TCAAAGACTTTTTTGCTTGGGCAAAGGTCAACCAGGTGCCGGTGACTCACGAGTT 1806 | || ||| | || ||||| | | || | ||| || || ||||||||||| Sbjct 141460 TGCGGGAGTTTATGGCGTGGGCCGATGCTAATCGGGTTCCCGTAACTCACGAGTT 141406 Score = 241 bits (266), Expect = 4e-60 Identities = 314/432 (73%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 2177 GATGACTGTAATAAAGAGCAGTAAATAAAGT-GAGTAGTCATGTCTTTTGTTGACCACCC 2235 ||||| | |||||||| ||||||| ||| ||||||||||||| |||||||| ||||| Sbjct 140957 GATGATTTAAATAAAGAACAGTAAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACCC 140898 Query 2236 TCCAGATTGGTTGGAATCGATCGGCGACGGCTTTCGTGAATTTCTCGGCCTTGAGGCGGG 2295 |||||||||||||||| || | || || | || |||||| || || ||||| Sbjct 140897 TCCAGATTGGTTGGAAGAGACCCTTGAGGGACTCAACGAGTTTCTCCATCTCGACGCGGG 140838 Query 2296 TCCCCCGAAACCCAAGGCCAATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCC 2355 | ||||||| ||||||| || || ||| | || || | || ||||| || || |||| Sbjct 140837 TACCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCC 140778 Query 2356 TGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGC 2415 ||| ||||||||||| || ||| ||||| || || ||||| || || |||||| || Sbjct 140777 TGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGC 140718 Query 2416 TGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAA 2475 |||||| ||| | ||||||| | ||| | | ||||| |||| |||||||| Sbjct 140717 CAACGAGGCTGCTC-TCCGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAA 140659 Query 2476 CCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACAC 2535 ||| |||||||| ||||| ||||||||||| ||||||||| ||| |||| |||| Sbjct 140658 CCCCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAG 140599 Query 2536 TTCTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACC 2595 || | | ||||||| | || || ||||||||| || ||| || | | || || Sbjct 140598 CTCCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCC 140539 Query 2596 TCTTGGCCTGGT 2607 ||||| ||||| Sbjct 140538 CCTTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14899345027990