Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq5313 116 1e-22 seq6933 113 1e-21 >seq5313 Length=180025 Score = 116 bits (128), Expect = 1e-22 Identities = 148/201 (74%), Gaps = 6/201 (3%) Strand=Plus/Minus Query 1256 CGGCTGGACCTGCAAGAACTTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTAC 1315 ||||||| | | ||| | | |||||| | |||||||||||||||| ||| || || || Sbjct 141906 CGGCTGGTGCCGGAAGGAGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGAC 141847 Query 1316 TACCGGCAAAACCATCATCGCTCAAGCTATTGCACATGCTGTTAAACTGTT-TGCTG--G 1372 |||||| || |||| |||||| | || || || ||||| || | ||| | | | | Sbjct 141846 TACCGGAAAGACCAACATCGCGGAGGCCATCGCGCATGCGGT---CCCGTTCTACAGCTG 141790 Query 1373 TGTTAATTGGACTAATGAAAACTTTCCCTTCTGTAACTGTCCAGGGAAACTGCTTATCTG 1432 || || ||||| || || |||||||| ||| | ||||| | ||| || | ||||| Sbjct 141789 CGTCAACTGGACCAACGAGAACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATCTG 141730 Query 1433 GTGGGAGGAGGGCAAGATGAC 1453 |||||||||||| |||||||| Sbjct 141729 GTGGGAGGAGGGTAAGATGAC 141709 Score = 105 bits (116), Expect = 2e-19 Identities = 183/262 (70%), Gaps = 3/262 (1%) Strand=Plus/Minus Query 2162 GTGGTGCCTGGGTATCGGTATCTTGGGCCTGGTAATAGCTTGGACCGTGGAAAGCCCGTT 2221 || || ||||| || |||||| || ||| ||| | | ||| || | ||||| Sbjct 140785 GTTGTTCCTGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTC 140726 Query 2222 AACAAAGCAGACGAGGCTGCTAAAAAGCACGATCAAGAATACGATCAACAGCTTAAAGCG 2281 || ||||| ||||||||||| |||||| | | |||||| | ||||| || || Sbjct 140725 AATAAAGCCAACGAGGCTGCTCTCC-GCACGACAAGGCATACGAAGAGCAGCTCAAGGCA 140667 Query 2282 GGAGACAATCCCTACATAAAATATAATCACGCGGACGAACAGTTCCAG-AAAGACCTACA 2340 || || || |||||| | ||||| ||||||||||||| |||| ||| | ||| || || Sbjct 140666 GGCGATAACCCCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGA-CTCCA 140608 Query 2341 AGGTGATACCAGTCTAGCCGGCAACGCGGCTAACGCTCTATTTCAAGGCAAAAAGACTCT 2400 ||| || | | ||||| || ||||| || ||||| || || || | ||| ||| | Sbjct 140607 AGGCGACAGCTCCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGT 140548 Query 2401 ACTAGCGCCCCTTGGCCTAGTA 2422 ||| ||||||||| || ||| Sbjct 140547 CTTAGAGCCCCTTGGTCTGGTA 140526 >seq6933 Length=88048 Score = 113 bits (124), Expect = 1e-21 Identities = 195/282 (69%), Gaps = 6/282 (2%) Strand=Plus/Plus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 ||||||||||| | || | |||||||||||| ||||||| |||||| || ||||||| Sbjct 8912 AGAGACATTTATCTTTAGAGCCCTATTTGGGCTGAAATTCCTGATACAGGTGCACATTTT 8971 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 || ||| ||| | ||||| || ||||| | || ||||| || |||||||| | | Sbjct 8972 CAGCCTCATCCAAATATGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTCTA 9031 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTA-- 3992 ||||||| | ||| || | || || || ||| ||| | || | | |||| Sbjct 9032 AAAAATATTCTAGTACCCACAGAACCACCTGCTAGCTT---TACAGAGTCTTCTACTAAG 9088 Query 3993 -GTTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAATGTTGTGGGAGGTACAG 4051 ||| || | | ||| |||||| || || |||||||||| |||||| | || Sbjct 9089 TCTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTAATTGGGAGTTGAAG 9148 Query 4052 AAAGAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACT 4093 ||| ||| ||||||||||||||| | ||||||||| Sbjct 9149 TCTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTACT 9190 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14064495510535