Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq5313 475 1e-130 >seq5313 Length=180025 Score = 475 bits (526), Expect = 1e-130 Identities = 722/1018 (71%), Gaps = 31/1018 (3%) Strand=Plus/Minus Query 803 TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAAC 862 ||| | | |||||| |||||||| ||||||||| | ||||| |||||||||||||| ||| Sbjct 142415 TATGTGCACGCCTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAAC 142356 Query 863 CTGGACGAGTATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAG 922 ||| || |||| | || ||||| ||||| ||||| ||||||||||| || | | Sbjct 142355 CTGCCAGACTATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTG 142296 Query 923 TTTCTGGCAGAATCCTCGCAGC--GCTCGCAGGAGG---CGGCT---TCGCAGCGTGAGT 974 || ||| || | ||| || |||||| |||| || || || ||| ||| Sbjct 142295 TT-CTGAGAGCAGTTGCGC-GCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAG---GAGG 142241 Query 975 TCTCGGCT------GACCCGG-TCATC-----AAAAGCAAGACTTCCCAGAAATACATGG 1022 | | |||||| || | || | ||| | || ||||||||||| Sbjct 142240 ACAAAGAAAATTTGGACCCGAATCCTAGTTGGAAGGGAAAGGCGACCGCGAAATACATGG 142181 Query 1023 CGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAA 1082 ||| ||||| ||| | |||||| | || ||||| || ||| ||||||||| || Sbjct 142180 AGCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGG 142121 Query 1083 ATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATCAAGGCCG 1142 | || ||| |||||||||||||||||| || |||| | || | ||||| ||||| | Sbjct 142120 ACCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTG 142061 Query 1143 CGCTCGACAACGCGACCAAAATTATGAGTCTGACAAA-AAGC--GCGGTGGACTACCTCG 1199 | || |||||||| | || ||| |||||| ||| || | |||||||| Sbjct 142060 CCCTGGACAACGCAGGCCGCATCATGG---TGACAACTAAGTTGGCCGCCGACTACCTAA 142004 Query 1200 TGGGGAGCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGA 1259 | || || || ||||| ||||| | |||| | ||| | || || || ||| Sbjct 142003 TCGGCCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGA 141944 Query 1260 ATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCA 1319 |||||||| | || ||||| ||| | || ||||||||| | | | | Sbjct 141943 ATGGCTACTATCCCAAGTACGCCGGAAGTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACG 141884 Query 1320 ACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGG 1379 |||| |||||||| ||||||| | |||||||| || ||||| |||||||||||||||| Sbjct 141883 GCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGG 141824 Query 1380 AGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTC 1439 |||||||||| || | || || || ||| ||||||| ||||||||||| || ||||||| Sbjct 141823 AGGCCATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTC 141764 Query 1440 CCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACA 1499 | || ||||||||||||||||||||| | || |||||||||||||| |||||||| || Sbjct 141763 CTTTCAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCA 141704 Query 1500 AGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAAT 1559 ||||||| | || || |||||||||||||| ||||||| |||| | ||||| ||||||| Sbjct 141703 AGGTGGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAAT 141644 Query 1560 GTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGT 1619 |||| ||| || ||||| || || ||||| || || ||||| || ||||||| Sbjct 141643 GTAAGGCCTTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGT 141584 Query 1620 GTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCA 1679 ||| ||| | || || ||| |||| || || || || |||||||| |||||||| || | Sbjct 141583 GTGCGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGA 141524 Query 1680 TGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAGCAGG 1739 |||||||||||||||| || | | ||| | || ||||| || || | || ||| Sbjct 141523 TGTTCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGG 141464 Query 1740 AAGTCAAGGACTTTTTTGCTTGGGCAAAGGTCAATCAGGTGCCGGTGACTCACGAGTT 1797 | | ||| ||| | || ||||| | | |||| ||| || || ||||||||||| Sbjct 141463 AGATGCGGGAGTTTATGGCGTGGGCCGATGCTAATCGGGTTCCCGTAACTCACGAGTT 141406 Score = 237 bits (262), Expect = 5e-59 Identities = 308/423 (73%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 2177 AATAAAGAACAGTAAATAAAG-CGAGTAGTCATGTCTTTTGTTGATCACCCTCCAGATTG 2235 |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 140948 AATAAAGAACAGTAAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACCCTCCAGATTG 140889 Query 2236 GTTGGAAGAAGTTGGTGAAGGTCTTCGCGAGTTTTTGGGCCTTGAAGCGGGCCCACCGAA 2295 ||||||||| ||| || || ||||||| | || || ||||| | ||||| Sbjct 140888 GTTGGAAGAGACCCTTGAGGGACTCAACGAGTTTCTCCATCTCGACGCGGGTACCCCGAA 140829 Query 2296 ACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTGGTTATAA 2355 || || || |||||||| || || || ||||| || || || | |||||||| || Sbjct 140828 GCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTGGTTACAA 140769 Query 2356 CTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAGACGAGGT 2415 ||||| || || |||||||| || || || || ||||| | || |||||| Sbjct 140768 GTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCAACGAGGC 140709 Query 2416 CGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCT 2475 || | |||||||| | ||| | |||||||| |||| || || ||||||||||| Sbjct 140708 TGCTC-TCCGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACCCCTACCT 140650 Query 2476 CAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGACACATCCTTCGG 2535 ||| ||||| ||||||||||| ||||||||| ||| ||| | ||||| ||| | | Sbjct 140649 CAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCTCCCTAGC 140590 Query 2536 GGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAACCTTTTGGCCT 2595 ||||||| || ||| || | || |||| |||||| |||| | || || |||| || Sbjct 140589 GGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCCTTGGTCT 140530 Query 2596 GGT 2598 ||| Sbjct 140529 GGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14736213513085