Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq5313 524 2e-145 >seq5313 Length=180025 Score = 524 bits (580), Expect = 2e-145 Identities = 681/938 (73%), Gaps = 34/938 (4%) Strand=Plus/Minus Query 798 CTACCTCCTGCCCAAGACCCAGCCCGAGCTGCAGTGGGCGTGGACTAACATGGAGGAGTA 857 ||| || ||||||||| ||| | |||||||||||||||||||||||| || || || Sbjct 142404 CTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAACCTGCCAGACTA 142345 Query 858 TATAAGCGCGTGTTTGAACCTGGCCGAACGCAAACGGCTCGTGGC------------GCA 905 ||||||||| | || || | |||||||||||||| ||| | ||| Sbjct 142344 TATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTGTTCTGAGAGCA 142285 Query 906 G---CAC-CTGACCCACGTCAGC--CAGACGCAGG---AGCAGAACAAGGAGAATCTGAA 956 | | | || | | | ||| | | | ||| || || |||| || ||| || | Sbjct 142284 GTTGCGCGCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAAAGAAAATTTGGA 142225 Query 957 CCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGCTACATGGAGCTGGT 1016 ||| ||| || || ||| ||| | ||||| |||||||||||||| Sbjct 142224 CCCGAATCCTA--------GTTGGAAGGG-AAAGGCGACCGCGAAATACATGGAGCTGGT 142174 Query 1017 CGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGC 1076 | ||| ||||||| ||| |||||||| ||| ||||||||| |||||||| | Sbjct 142173 CAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGACCAAGA 142114 Query 1077 CTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGA 1136 || ||| ||||||||||| | | || || || ||||| ||||| || ||||| Sbjct 142113 GTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTGCCCTGGA 142054 Query 1137 CAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTACCTGGTGGGGCCCTC 1196 ||| || ||| ||||||| | || || | || |||||||||| | || | | Sbjct 142053 CAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCGCCGACTACCTAATCGGCCGCGT 141994 Query 1197 GCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTGGAGCTGAACGGGTACGA 1256 | |||||| ||||| | ||||| ||||||| ||| | || ||||| || ||| | Sbjct 141993 GGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGGCTACTA 141934 Query 1257 TCCTGCCTACGCCGGCTCCGTCTTTC--TCGGCTGGGCCCAGAAAAAGTTCGGGAAGCGC 1314 ||| |||||||| ||||| |||||||| || ||| ||| ||| ||||| Sbjct 141933 TCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACGGCAAGCGG 141876 Query 1315 AACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATC 1374 |||||||||||||||||||| ||||| || ||||| ||||||||||| ||||| |||||| Sbjct 141875 AACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGCCATC 141816 Query 1375 GCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAAC 1434 || || || || || |||||| ||||||||||||||||||| ||||||||||| ||||| Sbjct 141815 GCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTTCAAT 141756 Query 1435 GATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTG 1494 || || || ||||| ||||||||||||||||||||||| ||||||||||||||||| || Sbjct 141755 GACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGGTC 141696 Query 1495 GAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCG 1554 |||| || |||||||| || || ||| | |||| | || ||||| || || ||| | Sbjct 141695 CAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAAGGCC 141636 Query 1555 TCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTG 1614 | ||||| |||| || || || |||||||||||||||||||||||||| || || Sbjct 141635 TTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGTGTGCGGTC 141576 Query 1615 ATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCGTTGCAGGACCGGATGTTCAAA 1674 || ||||| || |||||| |||||||| |||||||| || |||| |||||||||||| Sbjct 141575 ATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGTTCAAA 141516 Query 1675 TTTGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1712 ||||||||||||| | || | || |||||||| || Sbjct 141515 TTTGAACTCACCCATAGACTCAATCATGACTTTGGGAA 141478 Score = 178 bits (196), Expect = 4e-41 Identities = 226/310 (73%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 2307 CCCCGAAACCCAAAGCCAACCAGCAAAAGCAGGACAACGGCCGGGGTCTGGTGCTTCCTG 2366 ||||||| ||||| | |||||||| | |||||| | | ||| || || || |||||| Sbjct 140835 CCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTG 140776 Query 2367 GCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGG 2426 | |||||||| || || || || ||||| || ||||||||||| |||||||| || Sbjct 140775 GTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCA 140716 Query 2427 ACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAAGCGGGTGACAATC 2486 ||| || || ||| |||||||||||| ||||| |||||||||| || || || || | Sbjct 140715 ACGAGGCTGCTCTC-CGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACC 140657 Query 2487 CGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGT 2546 | ||||| || || ||||| ||||| ||||||||| || | || |||| || | | Sbjct 140656 CCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCT 140597 Query 2547 CATTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTC 2606 | | | ||| ||| || || | ||||||| |||||||||||| | || || | Sbjct 140596 CCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCC 140537 Query 2607 TCGGTCTGGT 2616 | |||||||| Sbjct 140536 TTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14988907428330