Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq5313 506 6e-140 >seq5313 Length=180025 Score = 506 bits (560), Expect = 6e-140 Identities = 677/938 (72%), Gaps = 34/938 (4%) Strand=Plus/Minus Query 697 CTACCTCCTGCCCAAGACTCAGCCCGAGCTGCAGTGGGCGTGGACTAACATGGAGGAGTA 756 ||| || ||||||||| || | |||||||||||||||||||||||| || || || Sbjct 142404 CTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAACCTGCCAGACTA 142345 Query 757 TATAAGCGCGTGCTTGAACCTGGCCGAGCGCAAACGGCTCGTGGC------------GCA 804 ||||||||| | | || || | || ||||||||||| ||| | ||| Sbjct 142344 TATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTGTTCTGAGAGCA 142285 Query 805 G---CAC-CTGACCCACGTCAGC--CAGACGCAGG---AGCAGAACAAGGAGAATCTGAA 855 | | | || | | | ||| | | | ||| || || |||| || ||| || | Sbjct 142284 GTTGCGCGCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAAAGAAAATTTGGA 142225 Query 856 CCCCAATTCTGACGCGCCCGTGATCAGGTCAAAAACCTCCGCGCGCTATATGGAGCTGGT 915 ||| ||| || || ||| ||| | ||||| || ||||||||||| Sbjct 142224 CCCGAATCCTA--------GTTGGAAGGG-AAAGGCGACCGCGAAATACATGGAGCTGGT 142174 Query 916 CGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGC 975 | ||| ||||||| ||| |||||||| ||| ||||||||| |||||||| | Sbjct 142173 CAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGACCAAGA 142114 Query 976 CTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGA 1035 || ||| ||||||||||| | | || || || ||||| ||||| || ||||| Sbjct 142113 GTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGATTAAGGCTGCCCTGGA 142054 Query 1036 CAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTACCTGGTGGGGCCCTC 1095 ||| || ||| ||||||| | || || | || |||||||||| | || | | Sbjct 142053 CAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCGCCGACTACCTAATCGGCCGCGT 141994 Query 1096 GCTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGCTCTCAACGGCTACGA 1155 | |||||| ||||| ||| ||||| ||||||| ||| ||| || || |||||| | Sbjct 141993 GGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGGCTACTA 141934 Query 1156 CCCTGCCTACGCCGGCTCCGTCTTTC--TCGGCTGGGCTCAGAAAAAGTTCGGGAAACGC 1213 || |||||||| ||||| |||||||| | ||| ||| ||| || || Sbjct 141933 TCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTGCCGGAAGGAGTACGGCAAGCGG 141876 Query 1214 AACACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATC 1273 |||||||||||||||||||||||||| || ||||| ||||||||||| ||||| |||||| Sbjct 141875 AACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGCCATC 141816 Query 1274 GCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAAT 1333 || || || || || |||||| ||||||||||||||||||| ||||||||||| |||||| Sbjct 141815 GCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTTCAAT 141756 Query 1334 GATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTG 1393 || || || ||||| ||||||||||||||||||||||| ||||||||||||||||| || Sbjct 141755 GACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGGTC 141696 Query 1394 GAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCG 1453 |||| || |||||||| || || ||| | |||| | || ||||| || || ||| | Sbjct 141695 CAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAAGGCC 141636 Query 1454 TCCGCCCAGATCGACCCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTG 1513 | ||||| |||| || || || |||||||||||||||||||||||||| || || Sbjct 141635 TTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCAACATGTGTGCGGTC 141576 Query 1514 ATTGACGGGAACAGCACCACCTTCGAGCACCAGCAGCCTCTCCAGGACCGGATGTTTAAG 1573 || ||||| || |||||| |||||||| |||||||| || |||| |||||||| || Sbjct 141575 ATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGTTCAAA 141516 Query 1574 TTCGAACTCACCCGCCGTCTGGAGCACGACTTTGGCAA 1611 || |||||||||| | || | || |||||||| || Sbjct 141515 TTTGAACTCACCCATAGACTCAATCATGACTTTGGGAA 141478 Score = 178 bits (196), Expect = 4e-41 Identities = 226/310 (73%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 2206 CCCCGAAGCCCAAAGCCAACCAGCAAAAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTG 2265 ||||||||||||| | |||||||| | |||||| | | ||| || || || |||||| Sbjct 140835 CCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTG 140776 Query 2266 GCTACAAGTACCTCGGACCCTTCAACGGACTCGACAAGGGGGAGCCCGTCAACGCGGCGG 2325 | |||||||| || || || || ||||| || ||||||||||| |||||||| || Sbjct 140775 GTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCA 140716 Query 2326 ACGCAGCGGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTGCAGGCGGGTGACAATC 2385 ||| || || ||| |||||||||||| ||||| ||||||| |||| || || || | Sbjct 140715 ACGAGGCTGCTCTC-CGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAACC 140657 Query 2386 CGTACCTGCGGTATAACCACGCCGACGCCGAGTTTCAGGAGCGTCTGCAAGAAGATACGT 2445 | ||||| || || ||||| ||||| ||||||||| || | || |||| || | | Sbjct 140656 CCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCT 140597 Query 2446 CTTTTGGGGGCAACCTCGGGCGAGCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTC 2505 | | | ||| ||| || || | ||||||| |||||||||||| | || || | Sbjct 140596 CCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCC 140537 Query 2506 TCGGTCTGGT 2515 | |||||||| Sbjct 140536 TTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13939747881490