Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq5313 367 4e-98 >seq5313 Length=180025 Score = 367 bits (406), Expect = 4e-98 Identities = 393/518 (76%), Gaps = 6/518 (1%) Strand=Plus/Minus Query 1129 AACCGCATCTACAAGATTTTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATT 1188 ||||| ||||| ||| || || ||||| |||| | || ||||| || ||| || Sbjct 141971 AACCGTGTCTACCGGATCTTCGACCTGAATGGCTACTATCCCAAGTACGCCGGAAGTCTT 141912 Query 1189 TTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACCT 1248 ||||||| ||||||| |||| | | |||||||| ||||| | |||||||| ||||| Sbjct 141911 CTGGTCGGCTGGTGCCGGAAGGAGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCC 141852 Query 1249 GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGA 1308 ||||| ||||| |||||||||||||||||||| || || ||||| || |||||||| | Sbjct 141851 GCGACTACCGGAAAGACCAACATCGCGGAGGCCATCGCGCATGCGGTCCCGTTCTACAGC 141792 Query 1309 TGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAGATGATTATC 1368 ||||| ||||||||||||||||||||||| ||||| ||||| || || || ||| | ||| Sbjct 141791 TGCGTCAACTGGACCAACGAGAACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATC 141732 Query 1369 TGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTGGAAACGGCTAAAGCGATTCTGGGA 1428 |||||||| ||||| || ||||| ||||||||||| | | || || || || |||||| Sbjct 141731 TGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGGTCCAGTCTGCAAAGGCCATCCTGGGA 141672 Query 1429 GGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCCG 1488 || || ||||||||| ||||| ||||| || || | | | ||| || | ||||||| Sbjct 141671 GGCTCAATGGTGAGAGTCGACCAGAAATGTAAGGCCTTGCAGCAGATTGACCAGACGCCG 141612 Query 1489 GTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACTACGTTC 1548 ||||| | ||| ||||||||||||||| ||||||||||| || | || |||||| Sbjct 141611 GTCATCGTCACCTCCAACACCAACATGTGTGCGGTCATCGACGGAAATGCCACCACGTTC 141552 Query 1549 GAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAGCTGTTGACTCGTTTACCC 1608 |||||| ||||||| ||||||| ||||||| || | || | | || | | || | Sbjct 141551 GAGCATCAGCAGCCCCTGGAGGATCGGATGTTCAAATTTGAAC---TCACCCATAGACTC 141495 Query 1609 ---GATGACTTTGGTAAGGTGACCAAACAGGAGGTGCG 1643 |||||||||| || | ||||| ||||| |||| Sbjct 141494 AATCATGACTTTGGGAAAATCTCCAAAGAGGAGATGCG 141457 Score = 114 bits (126), Expect = 4e-22 Identities = 190/268 (71%), Gaps = 5/268 (2%) Strand=Plus/Minus Query 2407 GAGGTCTCGTGTTCCCGGGTTACAAGTATCTAGGCCCTTTCAACGGTCTAGATAAAGGAA 2466 |||| ||||| | || ||||||||||||||||||||||| ||||||||||| || || Sbjct 140793 GAGGGCTCGTTGTTCCTGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGG 140734 Query 2467 AACCCGTCAACGAGGCAGACGCTGCCGCCTTAGAGCACGACAAGGCTTACGACCTCGAAC 2526 |||||||||| | || ||| || | || |||||||||||| ||||| | | Sbjct 140733 AACCCGTCAATAAAGCCAACGAGGCTG-CTCTCCGCACGACAAGGCATACGAAGAGCAGC 140675 Query 2527 TCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGA-TAGACGTTTCCAGGAA 2585 |||||| || | ||||| ||| | | ||||| | || || | |||| ||| | Sbjct 140674 TCAAGGCAGGCGATAACCCCTACCTCAAATACAATCACGCGGACGCGGAGTTT-CAGCAG 140616 Query 2586 CGTCTCAAAGACGATACCTCTTTCGGAGGGAATCTCGGTAAA-GCCATCTTTCAGGCCAA 2644 | ||| ||| ||| | ||| | | ||||| | | | ||| || | || |||| ||| Sbjct 140615 AGACTCCAAGGCGACAGCTCCCT-AGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAA 140557 Query 2645 AAAGAGGGTCCTCGAGCCCTTTGGTCTG 2672 ||| ||||| | |||||| |||||||| Sbjct 140556 GAAGCGGGTCTTAGAGCCCCTTGGTCTG 140529 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14864159799285