Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq5313 455 9e-125 >seq5313 Length=180025 Score = 455 bits (504), Expect = 9e-125 Identities = 541/739 (73%), Gaps = 0/739 (0%) Strand=Plus/Minus Query 846 AATACATGGCGCTCGTCAGGTGGCTCGTGGACAACGGCATCGCGACCGAGCGCGAGTGGA 905 ||||||||| ||| |||| ||| | ||||| || || ||| | | ||||| ||||||| Sbjct 142189 AATACATGGAGCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGA 142130 Query 906 TGCGCGAGGACTCGGACGGGTACCTGAGCTACAACGCCACGGGCGCCACGCGCGCCCAGA 965 | ||||||||| || ||||| || |||| | |||||| | || | | |||| Sbjct 142129 TCCGCGAGGACCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGTGGGGGCAGA 142070 Query 966 TCAAGGCCGCGCTCGACAACGCGGCCCGCATCATGGTCAACACGAAGACGGCCGCCGACT 1025 | ||||| || || |||||||| | |||||||||||| | || ||| ||||||||||| Sbjct 142069 TTAAGGCTGCCCTGGACAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCGCCGACT 142010 Query 1026 ACCTGGTCGGCAGGAACCCGCCCCTCGACGTGGAGGACAACAGGATCTACCGGCTGTTTC 1085 |||| ||||| | |||| ||| | | ||| | |||||||| | || Sbjct 142009 ACCTAATCGGCCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCG 141950 Query 1086 GCATGAACGGCTACGACCCCGCCTACGCGGGCAGCGTGCTGCTCGGCTGGTGCCGCACCG 1145 | |||| |||||| | ||| ||||| || || | ||| ||||||||||||| | | Sbjct 141949 ACCTGAATGGCTACTATCCCAAGTACGCCGGAAGTCTTCTGGTCGGCTGGTGCCGGAAGG 141890 Query 1146 GCTTCGGCAAGCGCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACC 1205 | ||||||||| |||||| ||||||| || || || || || ||||| ||||| ||| Sbjct 141889 AGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACA 141830 Query 1206 TCGCCGAGGCCATCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGA 1265 |||| ||||||||| || |||| || |||||| |||||||||||||||||||||||| Sbjct 141829 TCGCGGAGGCCATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGA 141770 Query 1266 ACTTCCCCTTCAACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGA 1325 |||| || ||||| ||||| |||||||| ||| | ||||||||||||||||| ||||||| Sbjct 141769 ACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGA 141710 Query 1326 CGTCCAAGGTCGTCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACC 1385 || ||||||| ||| || || ||||||||||| || ||| | |||| | ||||||| Sbjct 141709 CGGCCAAGGTGGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACC 141650 Query 1386 AGAAGTGCAAGAACTCGCAGCAGATCGAGCCCACGCCCGTCATNNNNNNNNNNNNNNNNN 1445 |||| || ||| || ||||||||| || | ||||| ||||| Sbjct 141649 AGAAATGTAAGGCCTTGCAGCAGATTGACCAGACGCCGGTCATCGTCACCTCCAACACCA 141590 Query 1446 ACATGTGCGAGGTCGTCGACGGGAACTCGACCACGTTCGAGCACCGGCAGCCGCTCGAGG 1505 ||||||| | |||| ||||||| || | |||||||||||||| | |||||| || |||| Sbjct 141589 ACATGTGTGCGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGG 141530 Query 1506 ACAGGATGTTCAAGTTCGAGCTCACCGTCAGGCTGCAGCCCACCTTCGGCAAGATCACCA 1565 | |||||||||| || || |||||| || || | | ||| || || ||| ||| Sbjct 141529 ATCGGATGTTCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCA 141470 Query 1566 AGCAGGAGGTGCGCGAGTT 1584 | ||||| |||| ||||| Sbjct 141469 AAGAGGAGATGCGGGAGTT 141451 Score = 250 bits (276), Expect = 7e-63 Identities = 321/438 (73%), Gaps = 10/438 (2%) Strand=Plus/Minus Query 2014 TATCGACGACGTCAATAAAGAGCAATAAAATGATTTACAGCAGTCATGTCGTTTGTCGAT 2073 ||| || || | |||||||| || |||||||| | || ||||||||||||||| ||| Sbjct 140961 TATGGATGATTTAAATAAAGAACAGTAAAATGAGTCG-AGTAGTCATGTCGTTTGTTGAT 140903 Query 2074 CACCCCCCAGACTGGCTCGAGGAGATCGGAGAGGGGCTCTCCGAGTTCATCGGACTAGAG 2133 ||||| ||||| ||| | || |||| | ||||| ||| |||||| || || || Sbjct 140902 CACCCTCCAGATTGGTTGGAAGAGACCCTTGAGGGACTCAACGAGTTTCTCCATCTCGAC 140843 Query 2134 GCGGGACCGCCGAAGCCTAAG-----CCGG--GCTACCAGGACCGCGCGCGCGGCCTCGT 2186 ||||| | |||||||| ||| || | || ||||||||| || || || ||||| Sbjct 140842 GCGGGTACCCCGAAGCCCAAGGGGAACCAGCAGC-ACCAGGACCAGGCCCGAGGGCTCGT 140784 Query 2187 CGTCCCCGGCTACAAGTACCTCGGGCCCTTCAACGGACTCGACAGGGGCGAGCCCGTCAA 2246 || || || |||||||| || || || || ||||| || |||| ||| || |||||||| Sbjct 140783 TGTTCCTGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAA 140724 Query 2247 CGCGGCCGACGCGGCGGCCAAGAAGCACGACGAGGAGTACGACCGGCTCCTCAAGGCGGG 2306 ||| ||| ||| || ||||||| ||| ||||| || |||||||| || Sbjct 140723 TAAAGCCAACGAGGCTGCTCTCC-GCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGG 140665 Query 2307 GGACAACCCGTACCTCGCCTACAACCACGCGGACGCCGAGTTCCAGAAGGACCTCAGCGG 2366 || ||||| |||||| ||||| ||||||||||| ||||| ||| || ||| || Sbjct 140664 CGATAACCCCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGG 140605 Query 2367 CGACTCCAGCCTAGCCGGCAACGCCGCGAACGCGCTCTTCCAGGCCAAGAAGAGGGTCCT 2426 |||| | |||||| || |||||||| |||||||| ||||||| ||||||| ||||| | Sbjct 140604 CGACAGCTCCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTT 140545 Query 2427 CGAGCCCTTCGGACTGGT 2444 |||||| | || ||||| Sbjct 140544 AGAGCCCCTTGGTCTGGT 140527 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13597491565905