Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20flavifrons_20[genbank_20GCA_5F001262665.1_202015-08-06] 38,367 sequences; 2,115,568,035 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq5313 127 6e-26 seq6933 91.5 4e-15 >seq5313 Length=180025 Score = 127 bits (140), Expect = 6e-26 Identities = 189/264 (72%), Gaps = 3/264 (1%) Strand=Plus/Minus Query 2212 CGCGGTCTAGTGGTTCCAGGTTATAAATACCTCGGTCCATTCAACGGATTAGACAAGGGC 2271 || || || || ||||| ||||| || || || || || || ||||| |||||||||| Sbjct 140794 CGAGGGCTCGTTGTTCCTGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGG 140735 Query 2272 GAGCCTGTCAACGCAGCTGACGCGGCTGCCCTTGAACACGACAAAGCTTATAACGAGCTT 2331 || || ||||| ||| ||| |||||| || |||||||| || || | |||| Sbjct 140734 GAACCCGTCAATAAAGCCAACGAGGCTGCTCTCCG-CACGACAAGGCATACGAAGAGCAG 140676 Query 2332 CTCGAGGCTGGAGACAACCCGTACATCAAGTACAACCACGCGGACGCCGTCTTTCAAGAA 2391 ||| |||| || || ||||| ||| |||| ||||| ||||||||||| | ||||| | Sbjct 140675 CTCAAGGCAGGCGATAACCCCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAG 140616 Query 2392 CGCTTGCAAGGAGATA-CTAGTTTGGGTGGTAACGCGGCTAACGCGGTTTTTCAATTCAA 2450 | | ||||| || | || | | | || ||||| || |||||| |||| || |||| Sbjct 140615 AGACTCCAAGGCGACAGCTCCCTAGCG-GGAAACGCCGCAAACGCGCTTTTCCAGGTCAA 140557 Query 2451 GAAGCGGTTGCTCGAGCCGTTTGG 2474 ||||||| | | ||||| |||| Sbjct 140556 GAAGCGGGTCTTAGAGCCCCTTGG 140533 Score = 98.7 bits (108), Expect = 3e-17 Identities = 143/200 (72%), Gaps = 4/200 (2%) Strand=Plus/Minus Query 1328 AAGGAATACGGAAAAAGGAATACCATCTGGCTCTACGGACCAGCTACCACCGGAAAGACT 1387 ||||| ||||| || |||| ||||||||||| | ||||| || || ||||||||||| Sbjct 141893 AAGGAGTACGGCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACC 141834 Query 1388 ATTATAGCGCAAGCTATAGCCCA--CGGTGCTGTCCTCTTTGGAGGAGTCAATTGGACTA 1445 | || ||| | || || || || |||| | || ||| | | ||||| ||||| | Sbjct 141833 AACATCGCGGAGGCCATCGCGCATGCGGTCCCGT--TCTACAGCTGCGTCAACTGGACCA 141776 Query 1446 ATGAAAACTTTCCCTTTTGTAATTGTCCTGGTAAACTGTTGATATGGTGGGAAGAGGGTA 1505 | || |||||||| || | | ||| | ||| || |||| |||||||| ||||||| Sbjct 141775 ACGAGAACTTTCCTTTCAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTA 141716 Query 1506 AAATGACACAAAAGATGGTC 1525 | ||||| ||| ||||| Sbjct 141715 AGATGACGGCCAAGGTGGTC 141696 >seq6933 Length=88048 Score = 91.5 bits (100), Expect = 4e-15 Identities = 188/280 (67%), Gaps = 0/280 (0%) Strand=Plus/Plus Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940 ||||||| ||||| || | | || || |||||| |||| || ||||| | || ||| | Sbjct 8910 ACAGAGACATTTATCTTTAGAGCCCTATTTGGGCTGAAATTCCTGATACAGGTGCACATT 8969 Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000 |||| || |||| | ||||| || || || ||| | ||||| || |||||| | Sbjct 8970 TTCAGCCTCATCCAAATATGGGAGGGTTTGGTTGTAAGCATCCACCCCCTATGATCTTTC 9029 Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACA 4060 | ||||| | | || ||| | || ||||| | | ||| | | | || | | || Sbjct 9030 TAAAAAATATTCTAGTACCCACAGAACCACCTGCTAGCTTTACAGAGTCTTCTACTAAGT 9089 Query 4061 GCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGATGCTGTGGGAGGTCCGGA 4120 || |||||| | ||| ||| || ||||| ||||| || | |||||| | | Sbjct 9090 CTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTAATTGGGAGTTGAAGT 9149 Query 4121 AAGAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTAC 4160 ||| | |||||||||||| || ||||| |||||||| Sbjct 9150 CTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTAC 9189 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14569883341025