Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq5234 471 1e-129 >seq5234 Length=178527 Score = 471 bits (522), Expect = 1e-129 Identities = 686/955 (72%), Gaps = 38/955 (4%) Strand=Plus/Minus Query 836 CTACCTGCTCCCCAAGACCCAGCCCGAGCTCCAGTGGGCGTGGACTAACATGGACCAG-- 893 ||| ||||| |||||| ||| | ||||| |||||||||||||||||| || |||| Sbjct 141279 CTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAACCTG--CCAGAC 141222 Query 894 TATATAAGCGCCTGTTTGAATCTCGCGGAGCGTAAACGGCTGGTGGCGCAGCATCTGAC- 952 ||||||||||| | ||||||| ||| || |||||||||||| | | ||||| Sbjct 141221 TATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTGT-TCTGAGA 141163 Query 953 GCACGTGT-CGC-AGA-CGCAGGAGC---------AGAACAAGGAAAACCA-GAACCCCA 999 ||| || ||| || ||| ||||| || | |||| || | ||| | Sbjct 141162 GCAGTTGCGCGCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAAAGAA----A 141107 Query 1000 ATTCTGACGCG----CCGGTCATCAGGTCAAAAACCTCCGCCAGGTACATGGAGCTGGTC 1055 ||| ||| || | || ||| ||| | |||| | ||||||||||||||| Sbjct 141106 ATTTGGACCCGAATCCTAGTTGGAAGGG-AAAGGCGACCGCGAAATACATGGAGCTGGTC 141048 Query 1056 GGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATCCAGGAGGACCAGGCG 1115 ||| ||||||| |||||||| || || | ||||||| |||||||| | | Sbjct 141047 AAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGACCAAGAG 140988 Query 1116 TCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATCAAGGCCGCGCTGGAC 1175 |||||| ||||||||||| | | || ||||| || || ||||| || |||||| Sbjct 140987 TCCTACCTCTCCTTCAACTCGACGGGCACGGCGCGGGGGCAGATTAAGGCTGCCCTGGAC 140928 Query 1176 AATGCCTCCAAAATCATGAGCCTGACAA---AGACGGCTCCGGACTACCTGGTGGGCCAG 1232 || || | |||||| |||||| || ||| | |||||||| | |||| Sbjct 140927 AACGCAGGCCGCATCATGG---TGACAACTAAGTTGGCCGCCGACTACCTAATCGGCCGC 140871 Query 1233 AACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAGATGAACGGGTAC 1292 ||| || ||||| || | ||||| ||||||| ||| |||| |||| || ||| Sbjct 140870 GTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGGCTAC 140811 Query 1293 GATCCGCAGTACGCGGCCTCCGTCTTCCTG--GGCTGGGCGCAAAAGAAGTTCGGGAAGA 1350 |||| ||||||| | |||||| | |||||| | ||| ||| || ||| Sbjct 140810 TATCCCAAGTACGCCGGAA--GTCTTCTGGTCGGCTGGTGCCGGAAGGAGTATGGCAAGC 140753 Query 1351 GGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATCGCGGAAGCCA 1410 |||||||||||||||| ||||| || || || || || || |||||||||||||| |||| Sbjct 140752 GGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGCCA 140693 Query 1411 TCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAACTTTCCGTTCA 1470 |||| || || || || |||||| ||||||| ||||||||||| ||||||||||| || | Sbjct 140692 TCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTTTA 140633 Query 1471 ACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCG 1530 | || || || ||||| ||||||||||||||||||||||| ||||||||||||||||| | Sbjct 140632 ATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGTGG 140573 Query 1531 TAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCAAAAGTGCAAGT 1590 | || || |||||||||||||| || | |||| | || ||||| || || ||| Sbjct 140572 TCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAAGG 140513 Query 1591 CATCGGCCCAGATCGACCCAACTCCCGTGATCGTCACCTCCAACACCAACATGTGCGCGG 1650 | | | ||||| |||| | || || |||||||||||||||||||||||||| |||| Sbjct 140512 CCTTGCAGCAGATTGACCAGATGCCGGTCATCGTCACCTCCAACACCAACATGTGTGCGG 140453 Query 1651 TCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGACCGGATGTTCA 1710 ||||||||||||| | ||||| |||||||| || || || || |||| |||||||||| Sbjct 140452 TCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGTTCA 140393 Query 1711 AGTTCGAGCTCACCAAGCGCCTGGAGCACGACTTTGGCAAGGTCACCAAGCAGGA 1765 | || || |||||| | | || | || |||||||| || || |||| |||| Sbjct 140392 AATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGGA 140338 Score = 217 bits (240), Expect = 4e-53 Identities = 235/310 (76%), Gaps = 1/310 (0%) Strand=Plus/Minus Query 2342 CCCCTAAACCCAAGGCAAATCAACAACATCAGGACAACGCTCGGGGTCTTGTGCTTCCGG 2401 |||| || ||||||| || || || || |||||| | || || || || || |||| | Sbjct 139710 CCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTG 139651 Query 2402 GTTACAAATACCTCGGACCCGGCAACGGACTCGACAAGGGGGAACCCGTCAACGCAGCGG 2461 ||||||| || || || || ||||| || |||||||||||||||||||| ||| | Sbjct 139650 GTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCG 139591 Query 2462 ACGCGGCAGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTCAAGGCCGGTGACAACC 2521 ||| ||| || ||| |||||||||||| ||||| ||||||||||||| || || || | Sbjct 139590 ACGAGGCTGCTCTCC-GCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAAAC 139532 Query 2522 CCTACCTCAAGTACAACCACGCCGACGCGGAGTTCCAGCAGCGGCTTCAGGGCGACACAT 2581 |||||||||| ||||| ||||| ||||||||||| |||||| | || || ||||||| | Sbjct 139531 CCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCT 139472 Query 2582 CGTTTGGGGGCAACCTCGGCAGAGCAGTCTTCCAGGCCAAAAAGAGGGTTCTTGAACCTC 2641 | | | ||| ||| || | || | ||||||| ||| ||| |||| | || || | Sbjct 139471 CCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCC 139412 Query 2642 TTGGTCTGGT 2651 |||||||||| Sbjct 139411 TTGGTCTGGT 139402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15137966021360