Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq5234 387 4e-104 >seq5234 Length=178527 Score = 387 bits (428), Expect = 4e-104 Identities = 696/1015 (69%), Gaps = 25/1015 (2%) Strand=Plus/Minus Query 812 TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCAGAGCTTCAGTGGGCGTGGACTAAC 871 ||| | | |||||| |||||||| ||||||||| ||||||| |||||||||||||||||| Sbjct 141290 TATGTGCACGCCTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAAC 141231 Query 872 CTCGAAGAGTATAAATTGGCCGCCCTCAATCTGGAGGAGCGCAAACGGCTCGTCGCTCAG 931 || ||| |||| | || ||||||||||| ||||| ||||||||||| || || | Sbjct 141230 CTGCCAGACTATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTG 141171 Query 932 TT-TCAGCTTGAGTCCTCGCAGCGCTCGCAAGAG-----GCATCT-TCCCAGAGGGACGT 984 || | || | | ||| |||||| ||| || || |||||| |||| Sbjct 141170 TTCTGAGAGCAGTTGCGCGCTA-GCTCGCTGGAGCTCCCGCCTCAGTCCCAGGAGGACAA 141112 Query 985 ------TTCGGCTGACCCGG-TCATC-----AAGAGCAAGACTTCCCAGAAATACATGGC 1032 || || ||||| || | ||| | ||| | || ||||||||||| Sbjct 141111 AGAAAATTTGG---ACCCGAATCCTAGTTGGAAGGGAAAGGCGACCGCGAAATACATGGA 141055 Query 1033 GCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTCCGAGAAGCAGTGGATTCAGGAGAA 1092 |||||| | ||| ||||||| | || ||||| || ||| ||||||| | ||| | Sbjct 141054 GCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGGA 140995 Query 1093 TCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAACTCTCGGAGCCAGATTAAAGCCGC 1152 || ||| |||||| ||||||||||| ||||| | | ||| | |||||||| || || Sbjct 140994 CCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGCGGGGGCAGATTAAGGCTGC 140935 Query 1153 GCTTGACAACGCGTCAAAAATTATGAGTCTGACCAAATCTGCCTCAGACTATCTCGTGGG 1212 || |||||||| || ||| || || | ||| | ||||| || | || Sbjct 140934 CCTGGACAACGCAGGCCGCATCATGGTGACAACTAAGTTGGCCGCCGACTACCTAATCGG 140875 Query 1213 ACAGACTGTTCCAGAGGACATTTCTGAAAACAGAATCTGGCAGATTTTTGATCTCAACGG 1272 | || || || ||||| | | |||| | ||| | ||| || || || || || Sbjct 140874 CCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGAATGG 140815 Query 1273 CTACGACCCGGCATACGCGGGCTCTGTTCTCTACGGCTGGTGCACTCGCGCCTTTGGAAA 1332 |||| | || ||||| || | |||| |||||||||| | | ||| || Sbjct 140814 CTACTATCCCAAGTACGCCGGAAGTCTTCTGGTCGGCTGGTGCCGGAAGGAGTATGGCAA 140755 Query 1333 GAGGAACACCGTCTGGCTGTATGGACCCGCGACCACCGGAAAGACCAACATCGCGGAAGC 1392 | |||||||| ||||||||| |||||||||||| ||||||||||||||||||||||| || Sbjct 140754 GCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGGAGGC 140695 Query 1393 CATCTCTCACACCGTGCCCTTTTATGGCTGTGTGAACTGGACTAATGAGAACTTNNNNNN 1452 |||| | || | || || || || |||| || |||||||| || |||||||| Sbjct 140694 CATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTCCTTT 140635 Query 1453 NNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGGGAGGAGGGAAAGATGACCAGCAAGGT 1512 || |||||| ||||||||||||||||||| |||||||| |||||| Sbjct 140634 TAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCAAGGT 140575 Query 1513 GGTGGAACCCGCCAAGGCCATCTTgggggggTCTAGAGTACGAGTGGATCAAAAATGTAA 1572 ||| | | || ||||||||| |||| || || | || |||| || || |||||||| Sbjct 140574 GGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAATGTAA 140515 Query 1573 ATCCTCTGTACAAG-TAGACTCTACCCCGGTGATTATCACCTCCAATACTAACATGTGTG 1631 ||| || | || | ||| | ||||| || |||||||||| || |||||||||| Sbjct 140514 GGCCT-TGCAGCAGATTGACCAGATGCCGGTCATCGTCACCTCCAACACCAACATGTGTG 140456 Query 1632 TGGTGGTGGATGGGAACTCCACGACCTTTGAACACCAGCAGCCGCTGGAAGACCGCATGT 1691 ||| | || || || |||| || || || || |||||||| ||||| || || |||| Sbjct 140455 CGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGATGT 140396 Query 1692 TCAGATTTGAACTCATGCGGCGGCTCCCGCCAGATTTTGGCAAGATTACCAAGCAGGAAG 1751 ||| ||||||||||| | | ||| | || ||||| || || |||| |||| Sbjct 140395 TCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGGAGA 140336 Query 1752 TCAAAGACTTTTTTGCTTGGGCAAAGGTCAACCAGGTGCCGGTGACTCACGAGTT 1806 | || ||| | || ||||| | | || | ||| || || ||||||||||| Sbjct 140335 TGCGGGAGTTTATGGCGTGGGCCGATGCTAATCGGGTTCCCGTAACTCACGAGTT 140281 Score = 241 bits (266), Expect = 4e-60 Identities = 314/432 (73%), Gaps = 2/432 (0%) Strand=Plus/Minus Query 2177 GATGACTGTAATAAAGAGCAGTAAATAAAGT-GAGTAGTCATGTCTTTTGTTGACCACCC 2235 ||||| | |||||||| ||||||| ||| ||||||||||||| |||||||| ||||| Sbjct 139832 GATGATTTAAATAAAGAACAGTAAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACCC 139773 Query 2236 TCCAGATTGGTTGGAATCGATCGGCGACGGCTTTCGTGAATTTCTCGGCCTTGAGGCGGG 2295 |||||||||||||||| || | || || | || |||||| || || ||||| Sbjct 139772 TCCAGATTGGTTGGAAGAGACCCTTGAGGGACTCAACGAGTTTCTCCATCTCGACGCGGG 139713 Query 2296 TCCCCCGAAACCCAAGGCCAATCAACAGAAGCAAGATAACGCTCGAGGTCTTGTGCTTCC 2355 | ||||||| ||||||| || || ||| | || || | || ||||| || || |||| Sbjct 139712 TACCCCGAAGCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCC 139653 Query 2356 TGGGTACAAGTATCTTGGTCCTGGGAACGGCCTTGATAAGGGCGATCCTGTCAATTTTGC 2415 ||| ||||||||||| || ||| ||||| || || ||||| || || |||||| || Sbjct 139652 TGGTTACAAGTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGC 139593 Query 2416 TGACGAGGTTGCCCGAGAGCACGACCTCTCCTACCAGAAACAGCTTGAGGCGGGCGATAA 2475 ||||||| ||| | ||||||| | ||| | | ||||| |||| |||||||| Sbjct 139592 CGACGAGGCTGCTC-TCCGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAA 139534 Query 2476 CCCTTACCTCAAGTACAACCACGCGGACGCAGAGTTTCAGGAGAAACTCGCTTCTGACAC 2535 || |||||||| ||||| ||||||||||| ||||||||| ||| |||| |||| Sbjct 139533 ACCCTACCTCAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAG 139474 Query 2536 TTCTTTTGGGGGAAACCTTGGGAAGGCTGTTTTCCAGGCTAAAAAGAGGATTCTCGAACC 2595 || | | ||||||| | || || ||||||||| || ||| || | | || || Sbjct 139473 CTCCCTAGCGGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCC 139414 Query 2596 TCTTGGCCTGGT 2607 ||||| ||||| Sbjct 139413 CCTTGGTCTGGT 139402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14901235360840