Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Eulemur_20macaco_20[genbank_20GCA_5F001262655.1_202015-08-06] 26,772 sequences; 2,119,875,225 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq5234 475 1e-130 >seq5234 Length=178527 Score = 475 bits (526), Expect = 1e-130 Identities = 722/1018 (71%), Gaps = 31/1018 (3%) Strand=Plus/Minus Query 803 TATATTCCCGCCTACCTGCTGCCGAAGGTCCAACCGGAGCTTCAGTGGGCGTGGACAAAC 862 ||| | | |||||| |||||||| ||||||||| | ||||| |||||||||||||| ||| Sbjct 141290 TATGTGCACGCCTATCTGCTGCCCAAGGTCCAATCAGAGCTGCAGTGGGCGTGGACTAAC 141231 Query 863 CTGGACGAGTATAAATTGGCCGCCCTGAATCTGGAGGAGCGCAAACGGCTCGTCGCGCAG 922 ||| || |||| | || ||||| ||||| ||||| ||||||||||| || | | Sbjct 141230 CTGCCAGACTATATAAGCGCAGCCCTCAATCTCGAGGAACGCAAACGGCTGGTGACTTTG 141171 Query 923 TTTCTGGCAGAATCCTCGCAGC--GCTCGCAGGAGG---CGGCT---TCGCAGCGTGAGT 974 || ||| || | ||| || |||||| |||| || || || ||| ||| Sbjct 141170 TT-CTGAGAGCAGTTGCGC-GCTAGCTCGCTGGAGCTCCCGCCTCAGTCCCAG---GAGG 141116 Query 975 TCTCGGCT------GACCCGG-TCATC-----AAAAGCAAGACTTCCCAGAAATACATGG 1022 | | |||||| || | || | ||| | || ||||||||||| Sbjct 141115 ACAAAGAAAATTTGGACCCGAATCCTAGTTGGAAGGGAAAGGCGACCGCGAAATACATGG 141056 Query 1023 CGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTCCGAGAAGCAGTGGATCCAGGAAA 1082 ||| ||||| ||| | |||||| | || ||||| || ||| ||||||||| || Sbjct 141055 AGCTGGTCAAATGGTTGGTGGAGAAGGGGATCACCTCGGAGCGAGAGTGGATCCGCGAGG 140996 Query 1083 ATCAGGAGAGCTACCTCTCCTTCAACTCCACCGGCAACTCTCGGAGCCAGATCAAGGCCG 1142 | || ||| |||||||||||||||||| || |||| | ||| | ||||| ||||| | Sbjct 140995 ACCAAGAGTCCTACCTCTCCTTCAACTCGACGGGCACGGCGCGGGGGCAGATTAAGGCTG 140936 Query 1143 CGCTCGACAACGCGACCAAAATTATGAGTCTGACAAA-AAGC--GCGGTGGACTACCTCG 1199 | || |||||||| | || ||| |||||| ||| || | |||||||| Sbjct 140935 CCCTGGACAACGCAGGCCGCATCATGG---TGACAACTAAGTTGGCCGCCGACTACCTAA 140879 Query 1200 TGGGGAGCTCCGTTCCCGAGGACATTTCAAAAAACAGAATCTGGCAAATTTTTGAGATGA 1259 | || || || ||||| ||||| | |||| | ||| | || || || ||| Sbjct 140878 TCGGCCGCGTGGTGCCCGATGACATCACCGGAAACCGTGTCTACCGGATCTTCGACCTGA 140819 Query 1260 ATGGCTACGACCCGGCCTACGCGGGATCCATCCTCTACGGCTGGTGTCAGCGCTCCTTCA 1319 |||||||| | || ||||| ||| | || ||||||||| | | | Sbjct 140818 ATGGCTACTATCCCAAGTACGCCGGAAGTCTTCTGGTCGGCTGGTGCCGGAAGGAGTATG 140759 Query 1320 ACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCACGACCGGCAAGACCAACATCGCGG 1379 |||| |||||||| ||||||| | |||||||| || ||||| |||||||||||||||| Sbjct 140758 GCAAGCGGAACACCATCTGGCTGTTTGGACCCGCGACTACCGGAAAGACCAACATCGCGG 140699 Query 1380 AGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCGTGAACTGGACCAATGAAAACTTTC 1439 |||||||||| || | || || || ||| ||||||| ||||||||||| || ||||||| Sbjct 140698 AGGCCATCGCGCATGCGGTCCCGTTCTACAGCTGCGTCAACTGGACCAACGAGAACTTTC 140639 Query 1440 CCTTTAATGACTGTGTGGACAAAATGCTCATTTGGTGGGAGGAGGGAAAGATGACCAACA 1499 | |||||||||||||||||||||||| | || |||||||||||||| |||||||| || Sbjct 140638 CTTTTAATGACTGTGTGGACAAAATGGTGATCTGGTGGGAGGAGGGTAAGATGACGGCCA 140579 Query 1500 AGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCTCAAAGGTGCGGGTCGATCAGAAAT 1559 ||||||| | || || |||||||||||||| ||||||| |||| | ||||| ||||||| Sbjct 140578 AGGTGGTCCAGTCTGCAAAGGCCATCCTGGGAGGCTCAATGGTGAGAGTCGACCAGAAAT 140519 Query 1560 GTAAATCCTCTGTTCAAATTGATTCTACCCCTGTCATTGTAACTTCCAATACAAACATGT 1619 |||| ||| || ||||| | || ||||| || || ||||| || ||||||| Sbjct 140518 GTAAGGCCTTGCAGCAGATTGACCAGATGCCGGTCATCGTCACCTCCAACACCAACATGT 140459 Query 1620 GTGTGGTGGTGGATGGGAATTCCACGACCTTTGAACACCAGCAGCCGCTGGAGGACCGCA 1679 ||| ||| | || || ||| |||| || || || || |||||||| |||||||| || | Sbjct 140458 GTGCGGTCATCGACGGAAATGCCACCACGTTCGAGCATCAGCAGCCCCTGGAGGATCGGA 140399 Query 1680 TGTTCAAATTTGAACTGACTAAGCGGCTCCCGCCAGATTTTGGCAAGATTACTAAGCAGG 1739 |||||||||||||||| || | | ||| | || ||||| || || | || ||| Sbjct 140398 TGTTCAAATTTGAACTCACCCATAGACTCAATCATGACTTTGGGAAAATCTCCAAAGAGG 140339 Query 1740 AAGTCAAGGACTTTTTTGCTTGGGCAAAGGTCAATCAGGTGCCGGTGACTCACGAGTT 1797 | | ||| ||| | || ||||| | | |||| ||| || || ||||||||||| Sbjct 140338 AGATGCGGGAGTTTATGGCGTGGGCCGATGCTAATCGGGTTCCCGTAACTCACGAGTT 140281 Score = 237 bits (262), Expect = 5e-59 Identities = 308/423 (73%), Gaps = 2/423 (0%) Strand=Plus/Minus Query 2177 AATAAAGAACAGTAAATAAAG-CGAGTAGTCATGTCTTTTGTTGATCACCCTCCAGATTG 2235 |||||||||||||||| || |||||||||||||| ||||||||||||||||||||||| Sbjct 139823 AATAAAGAACAGTAAAATGAGTCGAGTAGTCATGTCGTTTGTTGATCACCCTCCAGATTG 139764 Query 2236 GTTGGAAGAAGTTGGTGAAGGTCTTCGCGAGTTTTTGGGCCTTGAAGCGGGCCCACCGAA 2295 ||||||||| ||| || || ||||||| | || || ||||| | ||||| Sbjct 139763 GTTGGAAGAGACCCTTGAGGGACTCAACGAGTTTCTCCATCTCGACGCGGGTACCCCGAA 139704 Query 2296 ACCAAAACCCAATCAGCAGCATCAAGATCAAGCCCGTGGTCTTGTGCTGCCTGGTTATAA 2355 || || || |||||||| || || || ||||| || || || | |||||||| || Sbjct 139703 GCCCAAGGGGAACCAGCAGCACCAGGACCAGGCCCGAGGGCTCGTTGTTCCTGGTTACAA 139644 Query 2356 CTATCTCGGACCCGGAAACGGTCTCGATCGAGGAGAGCCTGTCAACAGGGCAGACGAGGT 2415 ||||| || || |||||||| || || || || ||||| | || ||||||| Sbjct 139643 GTATCTAGGCCCTTTTAACGGTCTAGACAAGGGGGAACCCGTCAATAAAGCCGACGAGGC 139584 Query 2416 CGCGCGAGAGCACGACATCTCGTACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCT 2475 || | |||||||| | ||| | |||||||| |||| || || || |||||||| Sbjct 139583 TGCTC-TCCGCACGACAAGGCATACGAAGAGCAGCTCAAGGCAGGCGATAAACCCTACCT 139525 Query 2476 CAAGTACAACCACGCGGACGCCGAGTTTCAGGAGAAGCTCGCCGACGACACATCCTTCGG 2535 ||| ||||| ||||||||||| ||||||||| ||| ||| | ||||| ||| | | Sbjct 139524 CAAATACAATCACGCGGACGCGGAGTTTCAGCAGAGACTCCAAGGCGACAGCTCCCTAGC 139465 Query 2536 GGGAAACCTCGGAAAGGCAGTCTTTCAGGCCAAGAAAAGGGTTCTCGAACCTTTTGGCCT 2595 ||||||| || ||| || | || |||| |||||| |||| | || || |||| || Sbjct 139464 GGGAAACGCCGCAAACGCGCTTTTCCAGGTCAAGAAGCGGGTCTTAGAGCCCCTTGGTCT 139405 Query 2596 GGT 2598 ||| Sbjct 139404 GGT 139402 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14738083148860