Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Papio_20anubis_20[genbank_20GCA_5F000264685.2_202017-04-20] 63,234 sequences; 2,959,356,508 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq3 360 6e-96 seq11 342 2e-90 >seq3 Length=181338541 Score = 360 bits (398), Expect = 6e-96 Identities = 486/673 (72%), Gaps = 13/673 (2%) Strand=Plus/Plus Query 1063 CTGACCAAGACGGCGGAGGACTACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATC 1122 |||||||| ||||| ||||||||| || || || | || || || ||||| Sbjct 14453730 CTGACCAAAACGGCTCCGGACTACCTGGTTGGGCAGCAGCCGGTG------GAGGACATT 14453783 Query 1123 CGTCAGAACCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGG 1182 || | |||||||| ||| ||| | || ||||| |||||||| ||| | || Sbjct 14453784 CGGGACAACCGCATTTACCGGATCTTACAAATGAACGGGTACGACCCCCAGTAGGCGGCC 14453843 Query 1183 AGTATTTTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTC 1242 | || | || ||| ||||| || | || ||||| ||||| | |||||||| Sbjct 14453844 TCCGTGTTCCTGGGCTGGGCTCAGAAAAAGTTCGGTAAGCGGAACACCATCTGGCTGTTT 14453903 Query 1243 GGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTC 1302 || | || |||||||||||||||||||||| ||| || ||||||||||| ||||| ||| Sbjct 14453904 GGGCCCGCCACCACCGGCAAGACCAACATCGTGGAAGCCATTGCCCATGCGGTGCCCTTC 14453963 Query 1303 TATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATG 1362 || || | || ||||||||||| |||||||||||||||||| | |||||||| || ||| Sbjct 14453964 TACGGCTATGTGAACTGGACCAATGAGAACTTTCCGTTCAACAATTGCGTCGACAAGATG 14454023 Query 1363 ATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATT 1422 | |||||||||||||||||||| ||||||||||| || ||||| | |||||||| || Sbjct 14454024 GTGATCTGGTGGGAGGAGGGCAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAGGCCATC 14454083 Query 1423 CTGGGAGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCG 1482 ||||| || ||| | ||||||||||| ||||| | |||| | |||||| || Sbjct 14454084 CTGGGCGGCAGCAAGGTACGTGTGGACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCC 14454143 Query 1483 ACGCCGGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACC 1542 || || ||||| | || |||||||||||||| || || |||||||||| ||| Sbjct 14454144 ACCCCCGTCATCGTGACGTCCAACACCAACATGTGCGCGGTGATTGACGGGAACAGCACC 14454203 Query 1543 ACGTTCGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAA-TTGCTGACTCG 1601 || || || || ||||||||||| | ||| ||||||| ||| | ||| || | || || Sbjct 14454204 ACTTTTGAACACCAGCAGCCGTTGCAAGACCGGATGTTCAAGTTTGAACTTACCCAC-CG 14454262 Query 1602 GTTGCCTGATGACTTTGGTAAGGTGACCAAACAGGAGGTGCGTCAATTCTTCAGGTGGTC 1661 || | | |||||||| ||||| | ||||||||| || | |||||| ||||| | Sbjct 14454263 TCTGGATCACGACTTTGGCAAGGTCAGCAAACAGGAAGTCAAAGACTTCTTCCGGTGGGC 14454322 Query 1662 TCAGGATCACCTGACCCCTGTGATCCCAGAATTCCTAGTGCGGAA-GGCGGAGTCTCGCA 1720 || |||||| |||| |||| | ||||| || | || |||||||| | Sbjct 14454323 CCAAGATCACATGACTGAAGTGACGCATGAATTTTACGTCAGAAAGGGCGGAGT----TA 14454378 Query 1721 AAAGACCCGCCCC 1733 |||||| |||||| Sbjct 14454379 AAAGACACGCCCC 14454391 Score = 172 bits (190), Expect = 2e-39 Identities = 221/304 (73%), Gaps = 3/304 (1%) Strand=Plus/Plus Query 2392 AGGACGATTCGAGAGGTCTCGTGTTCCCAGGCTACAATTATCTAGGCCCTTTCAACGGTC 2451 ||||| | || | ||||| ||| | || || ||||| || || || || ||||| || | Sbjct 14454899 AGGACAACTCTCGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAATGGAC 14454958 Query 2452 TAGATAAAGGAGAACCCGTCAACGAGGCAGACGCTGCCGCCTTAGAACACGACAAGGCTT 2511 | || || ||||| || ||||||||||||||||| || ||| | | ||||||||||| | Sbjct 14454959 TCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGCGCACGACAAGGCCT 14455018 Query 2512 ACGACCTCGAAATCAAGGACGGGCACAACCCGTACTTTGAGTACAACGAGGCCGACAGAC 2571 |||||| | || || ||| ||||||||||| | |||||||| | |||||| Sbjct 14455019 ACGACCAGCAGCTCCAGTCAGGGGACAACCCGTACCTCAAGTACAACCACGCCGACGCTG 14455078 Query 2572 GTTTCCAGGAACGTCTCAAAGACGATACCTCCTTTGGAGGCAATTTAGGTAAAGCCATCT 2631 |||||| | || | | | ||||| || ||||| ||||| | || ||| | | Sbjct 14455079 AGTTCCAGCAGCGCTTGGAGCAAGATACGTCTTTTGGGGGCAACCTTGGGCGAGCGGTAT 14455138 Query 2632 TCCAGGCCAAAAAGAGGGTTCTCGAACCCTTTGGTCTGGT---GGAAGACTCAAAGACGG 2688 ||||||||| || ||||||||| |||| ||||||||||| ||||| | ||||||| Sbjct 14455139 GCCAGGCCAAGAAAAGGGTTCTCAAACCTTTTGGTCTGGTTGAGGAAGTGGCTAAGACGG 14455198 Query 2689 CTCC 2692 |||| Sbjct 14455199 CTCC 14455202 >seq11 Length=132960392 Score = 342 bits (378), Expect = 2e-90 Identities = 650/943 (69%), Gaps = 33/943 (3%) Strand=Plus/Minus Query 663 CGGGGGCGCGAACAAGGTCCGGGCCGAGTCGTATATTCCCGCCTACCTGATCCCGAAACA 722 ||| |||| ||||||||| || ||||| ||||||||| ||||||| |||| ||| Sbjct 48532930 CGGTGGCGGGAACAAGGTGGTGGACGAGTGCTATATTCCCAACTACCTGCTCCCCAAAAC 48532871 Query 723 GCAACCGGAAGTGCAGTGGGCGTGGACTAACGTGCCCGAGTATATAAAAGCGTGCTTGCA 782 ||||||||| | |||||||||||||||||| || |||||||||| ||| ||| | Sbjct 48532870 CCAACCGGAACTTCAGTGGGCGTGGACTAACATGGAGGAGTATATAAGCATGTGTTTGAA 48532811 Query 783 CCGAGAACTGCGTGCCA--GTCTCGCGCGACTTCACTTCGAGGAGG-CGGGC-GTCTC-- 836 | | | | || | | |||| | | ||| | | | | | | | | ||| Sbjct 48532810 CTTC--AGGGAGCGCAAACGGCTCGTGGCTCAGCACCTGACGCACGTCAGTCAGACTCAG 48532753 Query 837 --GCAATCCAAGGAAAATCTCGCGAGAACTGCAGACGGCGCTCCCGTGATGCCGACCCG- 893 ||| ||| |||||| | || | | |||| | || ||||| | | | Sbjct 48532752 GAGCAGAACAAAGAAAATTTGTACCCAAATTCTGACG---CACCTGTGATCCGGTCAAAA 48532696 Query 894 -CGTCAGCAAACGCTACATGGAGCTCGTGGATTGGCTCGTGGAGAAGGGGATCACCACCG 952 | || || || ||||||||||| || | ||||||||||| ||||||||||| | | Sbjct 48532695 ACCTCTGCG--CGATACATGGAGCTGGTCGGGTGGCTCGTGGACAAGGGGATCACGTCAG 48532638 Query 953 AGAAGGAATGGCTGCTGGAAAACAGAGAAAGCTTTCGG-AGCT--TTCAGG-CCTCGAGC 1008 | ||| ||||| | | ||| || | |||| | | || |||| || | Sbjct 48532637 AAAAGCAATGGATCCAGGAGGACC----AGGCTTCCTACATCTCCTTCAACACCGTGTCA 48532582 Query 1009 AACTCGGCGCGTCAGATCAAGACGGCCCTGCAAGGCGCCATTCAGGAGATGCTTCTGACC 1068 || || | |||||| ||| | || || | ||| | | ||| ||||| Sbjct 48532581 AATTCCCGGTCTCAGATTAAGGCCGCTTTGGACAATGCCTCTAAAATTATGAGCCTGACA 48532522 Query 1069 AAGACGGCGGAGGACTACCTCGTCGGAAAGGATCCCGTCTCGGACGACGACATCCGTCAG 1128 || ||||| |||||||| | ||| || | ||||| || ||||| ||| Sbjct 48532521 AAAACGGCTCCAGACTACCTGATTGGACAGCAGCCCGTG------GAGGACATTGAGCAG 48532468 Query 1129 AACCGCATCTACAAGATTCTGGAACTGAACCACTACGACCCAGCGTACGTGGGGAGTATT 1188 |||||||| ||| |||| | || ||||| ||| ||||| | ||||| || | Sbjct 48532467 AACCGCATTTACTGGATTTTACAAATGAACGGCTATGACCCCGAGTACGCGGCCTCCGTC 48532408 Query 1189 TTGGTCGGGTGGTGCCAGAAGAAATGGGGCAAGCGAAACACGCTGTGGCTGTTCGGACAT 1248 || | || ||| |||||||||| || ||||| || || | |||||||| || | | Sbjct 48532407 TTTCTGGGCTGGGCTCAGAAGAAATTTGGGAAGCGGAATACCATCTGGCTGTTTGGGCCT 48532348 Query 1249 GCGACCACCGGCAAGACCAACATCGCGGAGGCTATTGCCCATGCTGTGCCGTTCTATGGA 1308 || ||||| |||||||||||||| ||||| || |||||||| || ||||| || || || Sbjct 48532347 GCTACCACGGGCAAGACCAACATTGCGGAAGCCATTGCCCACGCGGTGCCCTTTTACGGC 48532288 Query 1309 TGCGTTAACTGGACCAACGAGAACTTTCCGTTCAACGACTGCGTCGAAAAAATGATTATC 1368 ||||| |||||||| || |||||||||| ||||||||| || ||||| |||||| | ||| Sbjct 48532287 TGCGTGAACTGGACTAATGAGAACTTTCGGTTCAACGATTGTGTCGACAAAATGGTGATC 48532228 Query 1369 TGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTGGAAACAGCCAAGGCGATTCTGGG- 1427 ||||||||||||||||| |||||| |||| || || || |||||||||| || ||||| Sbjct 48532227 TGGTGGGAGGAGGGCAAGATGACCACCAAGGTCGTAGAGTCAGCCAAGGCCATCCTGGGC 48532168 Query 1428 AGGATCTCGGGTGAGAGTGGACCAAAAATGCAAAGCTTCGGTTCCGATCGAACCGACGCC 1487 || | | ||| | || ||||||| ||||| | |||| | |||||| || ||||| Sbjct 48532167 AGCAGC-AAGGTACGTGTCAACCAAAAGTGCAAGTCATCGGCCCAGATCGACCCCACGCC 48532109 Query 1488 GGTCATTATTACCAGTAACACCAACATGTGTTATGTCATCGACGGGAACACGACCACGTT 1547 ||||| | || |||||||||||||| || || |||||||||| |||| || Sbjct 48532108 CGTCATCGTGACGTCCAACACCAACATGTGCGTGGTGATTGACGGGAACAGCGCCACCTT 48532049 Query 1548 CGAGCATAAGCAGCCGTTGGAGGACAGGATGTTTAAGCTCGAA 1590 |||||| |||||||||| ||||| ||||||| ||| | ||| Sbjct 48532048 TGAGCATCAGCAGCCGTTACAGGACCGGATGTTCAAGTTTGAA 48532006 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14898488747790