Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Pongo_20abelii_20[refseq_20GCF_5F000001545.4_202010-03-08] 61,535 sequences; 3,441,244,233 total letters Query= NC_025824.1 Length=6408 Score E Sequences producing significant alignments: (Bits) Value seq35104 324 6e-85 seq5641 318 2e-83 seq47930 288 4e-74 seq10472 275 3e-70 seq51122 194 7e-46 seq7918 134 6e-28 seq28484 127 8e-26 seq46691 118 4e-23 seq30858 89.7 2e-14 >seq35104 Length=2014 Score = 324 bits (358), Expect = 6e-85 Identities = 257/306 (84%), Gaps = 2/306 (1%) Strand=Plus/Minus Query 5544 GACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCT 5603 |||| | ||||| || |||||| ||||| |||||||||||||||||||||||||||| Sbjct 333 GACCACGACACTCGCTGGCGCCCACACGCCCACTCCTTTCGCTTTCTTCCCTTCCTTTCT 274 Query 5604 CGCCACGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCG 5663 |||| ||||| || |||| ||| || | | || |||| ||| |||||||| ||||||| Sbjct 273 CGCCCCGTTCGCCCGCTTCCCCTCTCTTGTTTTATATCGTGGGCTCCCTTTACGGTTCCG 214 Query 5664 ATTTAGTGCTTTACGGCACCTCGACCTCCAA-AAACTTGATTTGGGTGATGGTTCACGTA 5722 ||||||||||||| |||||||| || |||| |||||||||| || || |||||||||| Sbjct 213 ATTTAGTGCTTTATGGCACCTCCAC-TCCATTAAACTTGATTATGGAGAGGGTTCACGTA 155 Query 5723 GTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTA 5782 | |||||||| ||||||||||||| ||||||| ||||||||||||||||| | ||||||| Sbjct 154 GAGGGCCATCTCCCTGATAGACGGCTTTTCGCTCTTTGACGTTGGAGTCCGCATTCTTTA 95 Query 5783 ATAGTGGACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTG 5842 ||||| |||||||||||||| ||| |||||| |||| ||| ||||| |||||||| || Sbjct 94 ATAGTCGACTCTTGTTCCAACCTGAAACAACTCTCAACCCTATCTCGGTCTATTCTTGTG 35 Query 5843 ATTTAT 5848 | |||| Sbjct 34 ACTTAT 29 >seq5641 Length=113028656 Score = 318 bits (352), Expect = 2e-83 Identities = 328/424 (77%), Gaps = 4/424 (1%) Strand=Plus/Minus Query 5523 TGTGGTGGTTACGCGCAGCGTGACCGCTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTT 5582 |||||||| ||| |||| |||||||||||||| | ||||| ||||||||||| Sbjct 6330424 TGTGGTGGGTACACGCACATGGACCGCTACACTTGTCTTGACCCTATGACCCGCTCCTTT 6330365 Query 5583 CGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCG 5642 |||||||||||||||| ||| ||||| || | || |||||||| || | |||| | ||| Sbjct 6330364 CGCTTTCTTCCCTTCCCTTCCCGCCAGGTGCGACGACTTTCCCCATCCACCTCTTATTCG 6330305 Query 5643 GGGGATCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCTCGACCTCCAAAAACTTGA 5702 |||||| | |||| |||||| ||||| ||||||||||||||||||||| || | |||| Sbjct 6330304 GGGGATACATTTAAGGTTCCAATTTAAAGCTTTACGGCACCTCGACCTCTAAGGAGTTGA 6330245 Query 5703 TTTGGGTGATGGTTCACGTAGTGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGAC 5762 | |||||||| |||||||| ||| |||||| ||||||| |||||||||||||||||||| Sbjct 6330244 ATAGGGTGATGATTCACGTACTGGCCCATCGTCCTGATAAACGGTTTTTCGCCCTTTGAC 6330185 Query 5763 GTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACACTCACAAC 5822 | |||| |||| | || |||||| | | ||| |||||||||||||| ||||| Sbjct 6330184 GGTGGAATCCAGGATCGTTAATAACGTATTCTAGTTCCAAACTGGAAGTGTGCTCACCCG 6330125 Query 5823 TAACTCGGCCTATTCTTTTGATTTATAAGGATTTTTGTCATTTTCTGCTTACTGGTTAAA 5882 || ||||| || |||||||||||| | || ||||| | |||| || | || | | Sbjct 6330124 TATCTCGGTATAATCTTTTGATTTACAGGGTATTTTGCCGATTTCGGCCGATTGTTGACC 6330065 Query 5883 AAAT-AAGCTGATTTAACAAATATTTAACGCG-AAATTTAACAAAACATTAACGTTTACA 5940 | || | ||||||| || |||||||||| ||||||||||||| | ||| ||| | Sbjct 6330064 AGATGACCCTGATTTCTGGAA-ATTTAACGCGAAAATTTAACAAAATGATGACGCTTA-A 6330007 Query 5941 ATTT 5944 |||| Sbjct 6330006 ATTT 6330003 >seq47930 Length=60714840 Score = 288 bits (318), Expect = 4e-74 Identities = 316/414 (76%), Gaps = 6/414 (1%) Strand=Plus/Plus Query 5495 CCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTACAC 5554 |||| | |||||||||||| |||| ||||| |||||||| || || ||||||| ||||| Sbjct 13365327 CCTGAAACGGCGCATTAAGTGCGGTGGGTGCGGTGGTTAAGCCCACCGTGACCTCTACAT 13365386 Query 5555 TTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCT 5614 ||| || ||||||||| |||| |||||||||||||||||||||||||| |||| ||||| Sbjct 13365387 TTGACACCGCCCTAGCACCCGTTCCTTTCGCTTTCTTCCCTTCCTTTCACGCCTCGTTCG 13365446 Query 5615 CCGGCTTTCCCCGTCAAGCTCTAAATCGGG-GGATCCCTTTAGG-GTTCCGATTTAGTGC 5672 |||| |||| |||||||| | ||||||| || ||||||| || | |||||| || Sbjct 13365447 CCGGGTTTCGCCGTCAAGTACGGAATCGGGACCCTCACTTTAGGTGTACAGATTTATTGT 13365506 Query 5673 TTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCAC-GTAGTGGGCCAT 5731 ||||| |||||||| | | ||| || ||| | |||||||||| || || ||| Sbjct 13365507 TTTACTGCACCTCGCACACAAAATACCTGACTACTACGATGGTTCACATTATTGCTTCAT 13365566 Query 5732 CGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGAC 5791 | | ||||||||||| | |||||| ||||| ||||| ||||| |||||||||| |||| Sbjct 13365567 CCCACTGATAGACGGCATGTCGCCCGTTGACTTTGGATTCCACATTCTTTAATACTGGAT 13365626 Query 5792 TCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTTATAA- 5850 ||||||| ||||||||||||| |||| ||| | || | |||| | |||| || || Sbjct 13365627 GCTTGTTCTAAACTGGAACAACGCTCAACCCTATCCCGCCTAATTCCTCTGATATAAAAA 13365686 Query 5851 -GGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAAT-AAGCTGATTTAACAAA 5902 |||| | | ||| || || | ||| |||| | || | |||||| |||| Sbjct 13365687 GGGATCTAGCATACATTCGGCATATTCGTTGAAAACTGAACCCGATTTATCAAA 13365740 Score = 87.8 bits (96), Expect = 7e-14 Identities = 89/116 (77%), Gaps = 0/116 (0%) Strand=Plus/Plus Query 5730 ATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGG 5789 ||| ||||||| ||||| ||||| ||||||||||||| | |||||||||| |||| || Sbjct 4084311 ATCACCCTGATCGACGGATTTTCTCCCTTTGACGTTGCGGACCACGTTCTTCAATACTGT 4084370 Query 5790 ACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATT 5845 | |||| || ||| ||| ||||| | || || || || |||||| | ||||| Sbjct 4084371 ATTCTTATTACAACCTGAAACAAAAGTCGACCTTAGCTAGGGCTATTCCTCTGATT 4084426 >seq10472 Length=202140232 Score = 275 bits (304), Expect = 3e-70 Identities = 288/372 (77%), Gaps = 5/372 (1%) Strand=Plus/Minus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||||||| ||||| ||||||||||| | || ||| ||||||| | || |||||||| Sbjct 32879101 ACGCGCCCTGAAGCGGATCATTAAGCGCGACTGGAGTGATGGTTACTCCCAACGTGACCG 32879042 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 ||| |||||| || ||| || | ||||||||| ||||||| |||||||||||| | Sbjct 32879041 CTATGCTTGCCGACGTCCTTGCTCTAGCTCCTTTCACTTTCTTACCTTCCTTTCTCACTT 32878982 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTA 5668 || || ||||||| || |||| || || ||||||||| ||||||||| |||||| ||| Sbjct 32878981 CGATCGACGGCTTTGCCTGTCAGGCACTCAATCGGGGGCACCCTTTAGGATTCCGAATTA 32878922 Query 5669 GTGCTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATGGTTCACGTAGTGGGC 5728 |||||||||| ||| ||| || | || |||||| ||||||||||| |||||||||| Sbjct 32878921 CTGCTTTACGGTACCCCGAGGCCCTACAA-TTGATTAGGGTGATGGTTGACGTAGTGGGG 32878863 Query 5729 CATCGCCCTGA-TAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCAC-GTTCTTTAATAG 5786 |||||||||| ||||||||||| | |||||||||| | || || | ||| |||| || Sbjct 32878862 TATCGCCCTGAGTAGACGGTTTTCCTCCCTTTGACGCTCCAGACCGCTTTTCCTTAACAG 32878803 Query 5787 TGGACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTT 5846 ||||| || | | || || || |||||| | ||| ||| | ||||||| || | Sbjct 32878802 TGGACACTCGCACGGAATTGAAATAACACTGTCCCCTATCTCTG-AACTTCTTTTCATCT 32878744 Query 5847 ATAAG-GATTTT 5857 ||| | |||||| Sbjct 32878743 ATATGAGATTTT 32878732 Score = 149 bits (164), Expect = 3e-32 Identities = 214/294 (73%), Gaps = 17/294 (6%) Strand=Plus/Plus Query 5556 TGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTC 5615 ||||| || |||| |||||||||| ||||||||| || |||||| ||||||| || ||| Sbjct 116029452 TGCCAACGTCCTACCGCCCGCTCCATTCGCTTTCATCGCTTCCTATCTCGCCGCGATCTT 116029511 Query 5616 C-GGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTAGTGCTT 5674 | |||||||||||| |||||||||||| |||| || | || |||| |||||| | || Sbjct 116029512 CTGGCTTTCCCCGT-AAGCTCTAAATCAGGGGCTCACGCTATGGTTACGATTTTTAGATT 116029570 Query 5675 TACGGCACCTCGACCTCCAAAAACTTG----ATTTGGGTGATGGTTCACGTAGTGGGCCA 5730 ||| || | | || | ||||| || | ||| ||| | |||| || | ||| Sbjct 116029571 TACAGCTCTTGGA---CTAAAAAGATGAAACAAATGG--GATAG-CCACGAAGCGAACCA 116029624 Query 5731 TCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGA 5790 || ||| ||| | | | ||||| | | || | ||||||||| |||| ||||||| | Sbjct 116029625 TCCCCCATATAATCAATCTCTCGCCGTATTACTATTGAGTCCACGATCTTAAATAGTGAA 116029684 Query 5791 CTCTTGTTCCAAACTGGAACAACACTCACAA--CTAACTCGGCCTATTCTTTTG 5842 ||||| | |||||| ||||| | |||| ||| || || ||||||||||| Sbjct 116029685 CTCTTTCTTCAAACTAGAACAGAA---ACAACCCTATCTGGGTCTATTCTTTTG 116029735 >seq51122 Length=156195299 Score = 194 bits (214), Expect = 7e-46 Identities = 160/187 (86%), Gaps = 6/187 (3%) Strand=Plus/Plus Query 5724 TGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCACGTTCTTTAA 5783 |||||||||||| ||||| || ||||||| |||| |||||||| |||||||| ||| | | Sbjct 118861767 TGGGCCATCGCCATGATAAACCGTTTTTCACCCTATGACGTTGCAGTCCACGCTCTGTCA 118861826 Query 5784 TAGTGGACTCTTGTTCCAAACTG-GAACAACACTCACA-ACTAACTCGGCCTATTC-TTT 5840 ||||||||||||||||| ||||| ||||||| |||| | ||| |||||||||||| ||| Sbjct 118861827 TAGTGGACTCTTGTTCC-AACTGAGAACAACCCTCAAACCCTATCTCGGCCTATTCGTTT 118861885 Query 5841 TGATTTATAA-GGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGA-TTTAA 5898 |||||||||| ||||||||| | |||| || || |||||||||||| |||||| ||||| Sbjct 118861886 TGATTTATAATGGATTTTTGCCGATTTCGGCCTAATGGTTAAAAAATGAGCTGATTTTAA 118861945 Query 5899 CAAATAT 5905 |||| || Sbjct 118861946 CAAAAAT 118861952 Score = 98.7 bits (108), Expect = 4e-17 Identities = 68/76 (89%), Gaps = 1/76 (1%) Strand=Plus/Minus Query 5724 TGGGCCATCGCCCTGATAGACGGTTTTTCGCCCTTTGACGTTGGAGTCCAC-GTTCTTTA 5782 ||||||| |||||||||| |||||| ||||||||||||| ||||| ||||| ||||||| Sbjct 123932606 TGGGCCAACGCCCTGATAAACGGTTCTTCGCCCTTTGACTTTGGAATCCACTTTTCTTTA 123932547 Query 5783 ATAGTGGACTCTTGTT 5798 |||||||||| ||||| Sbjct 123932546 ATAGTGGACTATTGTT 123932531 >seq7918 Length=135000294 Score = 134 bits (148), Expect = 6e-28 Identities = 136/177 (77%), Gaps = 0/177 (0%) Strand=Plus/Minus Query 5489 ACGCGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCG 5548 |||||| ||||| || ||||| | ||| ||||||| || |||||||||| || || Sbjct 118075571 ACGCGCTCTGTATAGGACCATTACTCTCGGAGGGTGTGTTGATTACGCGCAGTTTGTCCA 118075512 Query 5549 CTACACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCA 5608 | ||||||| ||||| |||| | | |||||||| |||| ||||||||||||||||| | Sbjct 118075511 CAACACTTGACAGCGTCCTAAAGACGGCTCCTTTTCCTTTATTCCCTTCCTTTCTCGCAA 118075452 Query 5609 CGTTCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGAT 5665 |||| ||| |||| ||||||| | | ||||| | | |||||| ||||||||| Sbjct 118075451 GGTTCAACGGATTTCTCCGTCAATTTTTTTGTCGGGAGCTACCTTTAAGGTTCCGAT 118075395 Score = 84.2 bits (92), Expect = 9e-13 Identities = 115/158 (73%), Gaps = 2/158 (1%) Strand=Plus/Plus Query 5787 TGGACTCTTGTTCCAAACTGGAACAACACTCACAACTAACTCGGCCTATTCTTTTGATTT 5846 || |||| | ||| | |||||| ||| ||| ||| || || |||||| |||||||| Sbjct 58430165 TGCACTCATTTTCTAGACTGGATTAACTCTCGACCCTACCTAGGTCTATTCCTTTGATTT 58430224 Query 5847 ATAAGGATTTTTGTCATTTTCTGCTTACTGGTTAAAAAATAAGCTGATTTAACAAATATT 5906 |||||| | | | | | || || || ||||||| |||| || ||||||||| ||| Sbjct 58430225 ATAAGGGATATCGCCGATCTCCGCCTAATGGTTAATAAATGAGTTGATTTAAC-CCCATT 58430283 Query 5907 TAACGCGAAATTTAACAAAACATTAACGTTTACAATTT 5944 || ||| || | ||||||| |||||| | ||||||| Sbjct 58430284 TACCGCTAATTAAAACAAAA-GTTAACGCTCACAATTT 58430320 >seq28484 Length=135191526 Score = 127 bits (140), Expect = 8e-26 Identities = 148/192 (77%), Gaps = 7/192 (4%) Strand=Plus/Plus Query 5755 CCTTTGACGTTGGAGTCCACGTTCTTTAATAGTGGACTCTTGTTCCAAACTGGAACAACA 5814 |||| |||| |||| |||||||||||||| | ||||||| |||| | |||||| || | | Sbjct 87855136 CCTTGGACGATGGAATCCACGTTCTTTAAAAATGGACTCGTGTTTCGAACTGGCAC-AGA 87855194 Query 5815 CTCACAACTAACTCGGCCTATTCTTTTGATTTATAA--GGATTTTTGTCATTTTCTGCTT 5872 ||| | ||| ||||| |||||| |||||||||||| ||||||| ||||||| | | Sbjct 87855195 CTC-GACCTATCTCGGTCTATTCCTTTGATTTATAAGGGGATTTTGCCCATTTTC-GTGT 87855252 Query 5873 ACTGGTTAAAAAATAAGCTGATTTAACAAATATTTAACGCGAAATTTAACAAAACATTAA 5932 | | | | ||||| |||||||||| |||| || | | | || | |||| ||| ||||| Sbjct 87855253 A-TCGCTTCAAAATGAGCTGATTTATCAAACATCTCTCCCCAATTCTAAC-AAATATTAA 87855310 Query 5933 CGTTTACAATTT 5944 || ||| ||||| Sbjct 87855311 CGCTTATAATTT 87855322 >seq46691 Length=94050890 Score = 118 bits (130), Expect = 4e-23 Identities = 160/222 (72%), Gaps = 1/222 (0%) Strand=Plus/Plus Query 5492 CGCCCTGTAGCGGCGCATTAAGCGCGGCGGGTGTGGTGGTTACGCGCAGCGTGACCGCTA 5551 ||||||| | || || || ||| | || ||||||| || |||||| ||||||||| Sbjct 80226290 CGCCCTGAAACGTATCAGTATGCGGGAAGGTAGTGGTGGATAATCGCAGCCTGACCGCTA 80226349 Query 5552 CACTTGCCAGCGCCCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGT 5611 ||||| ||||||||||||||||||| ||||||||||| ||||||||||||| | Sbjct 80226350 GTCTTGCAAGCGCCCTAGCGCCCGCTCGGTTCGCTTTCTT-GTGGCCTTTCTCGCCACTT 80226408 Query 5612 TCTCCGGCTTTCCCCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTAGTG 5671 | ||| ||| | |||| | || ||||||| ||||||| | | || ||||| | Sbjct 80226409 TATCCTGCTCTTCCCGGGTACATCACAATCGGGATTTCCCTTTTGAGGCCCCATTTATCG 80226468 Query 5672 CTTTACGGCACCTCGACCTCCAAAAACTTGATTTGGGTGATG 5713 |||| | || ||||| | | |||||| | | |||||| Sbjct 80226469 CTTTTCCGCCTTTCGACTGCAAGAAACTTAACTGACGTGATG 80226510 >seq30858 Length=10012 Score = 89.7 bits (98), Expect = 2e-14 Identities = 104/138 (75%), Gaps = 2/138 (1%) Strand=Plus/Plus Query 5565 CCTAGCGCCCGCTCCTTTCGCTTTCTTCCCTTCCTTTCTCGCCACGTTCTCCGGCTTTCC 5624 |||| |||| | |||||| |||||||||||||||||| | ||| | | ||||||||| Sbjct 6870 CCTAACGCCATCCCCTTTCCCTTTCTTCCCTTCCTTTCCCTCCA-TTCCCCCGGCTTTCT 6928 Query 5625 CCGTCAAGCTCTAAATCGGGGGATCCCTTTAGGGTTCCGATTTAGTGCTTTACGGCACCT 5684 || | || ||||| || | |||||||| ||||| ||||| |||||| | | |||| Sbjct 6929 CCTTTAACATCTAACTCTCCTGCTCCCTTTATCGTTCCCATTTACTGCTTT-CCGTACCT 6987 Query 5685 CGACCTCCAAAAACTTGA 5702 | ||| ||| | || ||| Sbjct 6988 CAACCCCCACACACCTGA 7005 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 20376284363280