Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq12111 111 4e-21 seq11457 111 4e-21 >seq12111 Length=5121679 Score = 111 bits (122), Expect = 4e-21 Identities = 199/285 (70%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 |||||||| || | |||| |||||||||||| ||||||| |||||| | ||||||| Sbjct 4721220 AGAGACATGTATCTTTAGGGCCCTATTTGGGCTGAAATTCCTGATACAGGTACACATTTT 4721161 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 |||||| ||| | ||||| || ||||| | || ||||| || ||||||| | | Sbjct 4721160 CATCCTCATCCAAACATGGGAGGGTTTGGTTGTAAGCATCCACCCTCTATGATCTTTCTA 4721101 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTAG- 3993 |||||||| ||||| | | || || || ||| ||| | | | | | | || Sbjct 4721100 AAAAATACTCCAGTATCCACAGAACCACCTGCTAGCTTTA--CAGAGTCTCCTGTTAAGT 4721043 Query 3994 -TTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAA-TGTTGTGGGAGGTACAG 4051 ||| || | | ||| |||||| || || |||||||||| || | |||||| | | Sbjct 4721042 CTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTGAT-TGGGAGTT---G 4720987 Query 4052 AAA---GAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACT 4093 ||| ||| ||| ||||||||||||||| | ||||||||| Sbjct 4720986 AAATCTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTACT 4720942 >seq11457 Length=20396 Score = 111 bits (122), Expect = 4e-21 Identities = 199/285 (70%), Gaps = 12/285 (4%) Strand=Plus/Minus Query 3815 AGAGACATTTACTTACAGGGGCCTATTTGGGCTAAAATTCCAAATACAGATGGACATTTT 3874 |||||||| || | |||| |||||||||||| ||||||| |||||| | ||||||| Sbjct 18977 AGAGACATGTATCTTTAGGGCCCTATTTGGGCTGAAATTCCTGATACAGGTACACATTTT 18918 Query 3875 CATCCTTCTCCCAGAATGGGTGGTTTTGGATTAAAACATCCTCCGCCTATGATTCTGATC 3934 |||||| ||| | ||||| || ||||| | || ||||| || ||||||| | | Sbjct 18917 CATCCTCATCCAAACATGGGAGGGTTTGGTTGTAAGCATCCACCCTCTATGATCTTTCTA 18858 Query 3935 AAAAATACACCAGTTCCTGCTGATCCTCCAACTACCTTCAATCCAATGCCACAGACTAG- 3993 |||||||| ||||| | | || || || ||| ||| | | | | | | || Sbjct 18857 AAAAATACTCCAGTATCCACAGAACCACCTGCTAGCTTTA--CAGAGTCTCCTGTTAAGT 18800 Query 3994 -TTTCATTACTGAATACAGTACAGGACAAGTAACTGTTGAAA-TGTTGTGGGAGGTACAG 4051 ||| || | | ||| |||||| || || |||||||||| || | |||||| | | Sbjct 18799 CTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTGAT-TGGGAGTT---G 18744 Query 4052 AAA---GAATCCTCCAAAAGATGGAATCCAGAAGTACAGTTTACT 4093 ||| ||| ||| ||||||||||||||| | ||||||||| Sbjct 18743 AAATCTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTACT 18699 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14066931360595