Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Propithecus_20coquereli_20[refseq_20GCF_5F000956105.1_202015-03-23] 22,539 sequences; 2,798,152,141 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq12111 96.9 1e-16 seq11457 96.9 1e-16 >seq12111 Length=5121679 Score = 96.9 bits (106), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940 ||||||| || || || | || || || |||||| |||| || ||||| | | ||| | Sbjct 4721222 ACAGAGACATGTATCTTTAGGGCCCTATTTGGGCTGAAATTCCTGATACAGGTACACATT 4721163 Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000 |||| || |||| | ||||| || || || ||| | ||||| | |||||| | Sbjct 4721162 TTCATCCTCATCCAAACATGGGAGGGTTTGGTTGTAAGCATCCACCCTCTATGATCTTTC 4721103 Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACA 4060 | ||||| || || || || | || ||||| | | ||| | | | |||| | || Sbjct 4721102 TAAAAAATACTCCAGTATCCACAGAACCACCTGCTAGCTTTACAGAGTCTCCTGTTAAGT 4721043 Query 4061 GCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGA-TGCTGTGGGAGGTCCGG 4119 || |||||| | ||| ||| || ||||| ||||| || | || | |||||| | | Sbjct 4721042 CTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTGAT-TGGGAGTT---G 4720987 Query 4120 AAA---GAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTAC 4160 ||| ||| | |||||||||||| || ||||| |||||||| Sbjct 4720986 AAATCTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTAC 4720943 >seq11457 Length=20396 Score = 96.9 bits (106), Expect = 1e-16 Identities = 194/284 (68%), Gaps = 8/284 (3%) Strand=Plus/Minus Query 3881 ACAGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACT 3940 ||||||| || || || | || || || |||||| |||| || ||||| | | ||| | Sbjct 18979 ACAGAGACATGTATCTTTAGGGCCCTATTTGGGCTGAAATTCCTGATACAGGTACACATT 18920 Query 3941 TTCACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCA 4000 |||| || |||| | ||||| || || || ||| | ||||| | |||||| | Sbjct 18919 TTCATCCTCATCCAAACATGGGAGGGTTTGGTTGTAAGCATCCACCCTCTATGATCTTTC 18860 Query 4001 TCAAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCAAACCGACTCCGATGAACA 4060 | ||||| || || || || | || ||||| | | ||| | | | |||| | || Sbjct 18859 TAAAAAATACTCCAGTATCCACAGAACCACCTGCTAGCTTTACAGAGTCTCCTGTTAAGT 18800 Query 4061 GCTTCATCAGCGAATACAGTACCGGTCAGGTGACTGTAGAGA-TGCTGTGGGAGGTCCGG 4119 || |||||| | ||| ||| || ||||| ||||| || | || | |||||| | | Sbjct 18799 CTTTTATCAGCCAGTACTCTACAGGCCAGGTCACTGTTGAAACTGAT-TGGGAGTT---G 18744 Query 4120 AAA---GAAGACTCCAAGAGATGGAACCCGGAAATCCAGTTTAC 4160 ||| ||| | |||||||||||| || ||||| |||||||| Sbjct 18743 AAATCTGAACATAGCAAGAGATGGAATCCAGAAATTCAGTTTAC 18700 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14572406719925