Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001401.2 Length=4679 Score E Sequences producing significant alignments: (Bits) Value seq1723 221 4e-54 >seq1723 Length=1657771 Score = 221 bits (244), Expect = 4e-54 Identities = 400/584 (68%), Gaps = 37/584 (6%) Strand=Plus/Plus Query 1032 TCGGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCATACATCTCCTTCAATGCGGCCTCC 1091 || |||||| | |||||||| ||||| |||||||| ||| | | | |||||| | || Sbjct 974868 TCAGAGAAGGAATGGATCCAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCT 974927 Query 1092 AACTCGCGGTCCCAAATCAAGGCTGCCTTGGACAATGCGGGAAAGATTATGAGCCTGACT 1151 | ||| | || |||||||| || | ||||| ||| ||||| | || || || Sbjct 974928 GGCAGTCGGGCTCAGATCAAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACC 974987 Query 1152 AAAACCGCCCCCGACTACCTGGTGGGCCAGCAGCCCGTGGAGGACATTTCCAGCAATCGG 1211 || ||||| |||||||| || ||| || | ||| ||||||||||| ||||| Sbjct 974988 AAGACCGCTGTAGACTACCTCGTTGGCAGCCAATCACTGGGAGACATTTCCAGGAATCGT 975047 Query 1212 ATTTATAAAATTT-TGGAACTAAACGGGTACGATCCCCAATATGCGGCTTCCGTCTTTCT 1270 | ||| ||| ||| |||| || | || | | |||| Sbjct 975048 GTGTATGGAATGGCTGGGACTATACTGTTAGGCTG----------GGCT----------- 975086 Query 1271 GGGATGGGCCACGAAAAAGTTCGGCAAGAGGAACACCATCTGGCTGTTTGGGCCTGCAAC 1330 | | |||| ||| || || | |||||||||||||| | ||| || || || Sbjct 975087 ---AAGTGCCA-------GTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCAC 975136 Query 1331 TACCGGGAAGACCAACATCGCGGAGGCCATAGCCCACACTGTGCCCTTCTACGGGTGCGT 1390 || || ||||| || || || ||||| || || || ||||||| ||||| || || || Sbjct 975137 CACTGGCAAGACAAATATTGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGT 975196 Query 1391 AAACTGGACCAATGAGAACTTTCCCTTCAACGACTGTGTCGACAAGATGGTGATCTGGTG 1450 |||||||||||||||| |||||| |||||||||| || ||||||||| | |||||||| Sbjct 975197 GAACTGGACCAATGAGATCTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTG 975256 Query 1451 GGAGGAGGGGAAGATGACCGCCAAGGTCGTGGAGTCGGCCAAAGCCATTCTCGGAGGAAG 1510 ||| || || |||||||| |||||| || | ||| | ||||| | || || || | || Sbjct 975257 GGAAGAAGGCAAGATGACTGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAG 975314 Query 1511 CAAGGTGCGCGTGGACCAGAAATGCAAGTCCTCGGCCCAGATAGAC-CCGACTCCCGTGA 1569 |||||| | || |||||||| ||||| || || ||||||||| | | | || || Sbjct 975315 CAAGGTTAGAGTCGACCAGAAGTGCAAATCTTCTCAGCAGATAGACTCTCAATGCC-TG- 975372 Query 1570 TCGTCACCTCCAACACCAACATGTGCGCCGTGATTGACGGGAAC 1613 | ||||| |||||| ||||| |||| ||||| ||||| Sbjct 975373 GCATCACCAACAACACGGACATGACGACCGTTGTTGACTGGAAC 975416 Score = 136 bits (150), Expect = 1e-28 Identities = 210/298 (70%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 4006 CCAGGCATGGTCTGGCAGGACAGAGATGTGTACCTTCAGGGGCCCATCTGGGCAAAGATT 4065 || ||| ||| |||||||| ||| || | |||| || || |||||||||| ||||| Sbjct 977112 CCTGGCCAGGTTTGGCAGGAGAGACATCT--ACCTGCAAGGATCCATCTGGGCCAAGATC 977169 Query 4066 CCACACACGGACGGACATTTTCACCCCTCTCCCCTCATGGGTGGATTCGGACTTAAACAC 4125 || |||| ||| ||||| || || || |||| || || || ||| |||| || || Sbjct 977170 CCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGA 977229 Query 4126 CCTCCTCCACAGATTCTCATCAAGAACACCCCGGTACCTGCGAATCCTTCGACCACCTTC 4185 |||| || ||||| ||||||||||||| ||||| | ||| || ||| | || | ||| Sbjct 977230 CCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTC 977289 Query 4186 AGTGCGGCAAAGTTTGCTTCCTTCATCACACAGTACTCCACGGGACAGGTCAGCGTGGAG 4245 || | || ||| | | || ||||| ||||||||||| || ||||||| ||| | Sbjct 977290 AGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAA 977349 Query 4246 ATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAACGCTGGAATCCCGAAATTCAGTACA 4303 || || || || |||| || ||| | | | |||||| ||| | || ||| ||| Sbjct 977350 ATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACA 977404 Score = 91.5 bits (100), Expect = 4e-15 Identities = 198/290 (68%), Gaps = 11/290 (4%) Strand=Plus/Plus Query 2317 AAGGACGACAGCAGGGGTCTTGTGCTTCCTGGGTACAAGTACCTCGGACCCTTCAACGGA 2376 |||| ||||| ||| || || || |||| ||||||||| ||| | || || || | | Sbjct 976255 AAGGTCGACACCAGAGGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAAGAA 976314 Query 2377 CTCGACAAGGGAGAGCCGGTCAACGAGGCAGACGCCGCGGCCCTCGAGCACGACAAAGCC 2436 || ||||| || || || |||||| |||| ||| | | ||| | ||| | | ||| Sbjct 976315 CTTGACAAAGGCGAACCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AGGCC 976372 Query 2437 TACGACCGGCAGCTCGA--CAGCGGAGACAACCCGTACCTCAAGTACAACCACGCCGACG 2494 ||| || || ||| | |||| || ||| | ||| | || |||||||||||| ||| Sbjct 976373 TACCACGCCCAACTCAAGGCAGCTGA--CAATCAGTATTTGAAATACAACCACGCCAACG 976430 Query 2495 -CGGAGTTTCAGGAGCGCCTTAAAG--AAGATACGTCTTTTGGGGGCAACCTCGGACGAG 2551 | |||||||||||| | || ||| || ||| || || || |||||| | | | Sbjct 976431 ACAGAGTTTCAGGAGAGACTCTAAGGCAACATA--TCCTTCCTGGACAACCTTGCAAAGG 976488 Query 2552 CAGTCTTCCAGGCGAAAAAGAGGGTTCTTGAACCTCTGGGCCTGGTTGAG 2601 ||| || ||| | || ||| || | || ||| || || ||||| ||| Sbjct 976489 GAGTGTTTCAGACCAAGAAGCGGATACTCGAAGTGCTTGGTCTGGTAGAG 976538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14769837902340