Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001729.1 Length=4726 Score E Sequences producing significant alignments: (Bits) Value seq1723 255 2e-64 >seq1723 Length=1657771 Score = 255 bits (282), Expect = 2e-64 Identities = 444/645 (69%), Gaps = 38/645 (6%) Strand=Plus/Plus Query 987 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATT 1046 ||| ||| ||| || ||||| |||| | ||| | || |||||| ||| ||||||| Sbjct 974827 TACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTCAGAGAAGGAATGGATC 974885 Query 1047 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1106 || ||||| |||||||| ||| | | | ||| || | || | ||| | |||||| Sbjct 974886 CAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGGCAGTCGGGCTCAGATC 974945 Query 1107 AAGGCCGCGCTGGACAATGCCTCCAAGATCATGAGCCTGACAAAGACGGCTCCGGACTAC 1166 |||||||| || ||||| | ||||||||| || || || ||||| ||| |||||| Sbjct 974946 AAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACCAAGACCGCTGTAGACTAC 975005 Query 1167 CTGGTGGGCAGCAACCCGCCGGAGGACATTACCAAAAATCGGATCTACCAAATC-CTGGA 1225 || || |||||| | | | || |||||| ||| ||||| | || ||| |||| Sbjct 975006 CTCGTTGGCAGCCAATCACTGGGAGACATTTCCAGGAATCGTGTGTATGGAATGGCTGGG 975065 Query 1226 GCTGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAA 1285 || || | || | ||||||| | || | Sbjct 975066 ACTATACTGTTAGG--------------------------CTGGGCTAAGTGCCA----- 975094 Query 1286 GTTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACAT 1345 ||| || || | |||||||||||||| | ||| |||||||| || || || || || || Sbjct 975095 GTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATAT 975154 Query 1346 CGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTAAACTGGACCAATGAGAA 1405 || || || || || || || ||||| ||||| || || || |||||||||||||||| Sbjct 975155 TGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGAT 975214 Query 1406 CTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1465 |||||| |||||||| | ||| ||||||||| | ||||||||||| || ||||||||||| Sbjct 975215 CTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGAC 975274 Query 1466 GGCCAAGGTCGTGGAGAGCGCCAAGGCCATTCTGGGCGGAAGCAAGGTGCGCGTGGACCA 1525 |||||| || | ||| ||||||| || || || | |||||||| | || ||||| Sbjct 975275 TGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGACCA 975332 Query 1526 AAAGTGCAAGTCATCGGCCCAGATCGA-ACCCACTCCCGTGATCGTCACCTCCAACACCA 1584 |||||||| || || ||||| || | || | || || | ||||| |||||| Sbjct 975333 GAAGTGCAAATCTTCTCAGCAGATAGACTCTCAATGCC-TG-GCATCACCAACAACACGG 975390 Query 1585 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCATC 1629 ||||| |||| ||||| |||||| ||||| | ||||||| Sbjct 975391 ACATGACGACCGTTGTTGACTGGAACATGACCACGATGGAGCATC 975435 Score = 163 bits (180), Expect = 8e-37 Identities = 216/298 (72%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 4015 CCTGGCATGGTGTGGCAAGATCGTGACGTGTACCTTCAAGGACCTATCTGGGCAAAGATT 4074 |||||| ||| ||||| || | ||| | ||||| |||||| | |||||||| ||||| Sbjct 977112 CCTGGCCAGGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATC 977169 Query 4075 CCTCACACGGATGGACACTTTCATCCTTCTCCTCTGATGGGAGGCTTTGGACTGAAACAT 4134 ||||||| |||||||||||| ||||| |||| | || || || | || ||||| Sbjct 977170 CCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGA 977229 Query 4135 CCGCCTCCTCAAATCATGATCAAAAATACTCCGGTACCGGCAAATCCTCCGACGACTTTC 4194 || | ||||| || | ||||| || |||||||| | || || ||||| |||| ||| Sbjct 977230 CCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTC 977289 Query 4195 AGCCCGGCCAAGTTTGCTTCATTTATCACTCAGTACTCCACTGGACAGGTCAGCGTGGAA 4254 ||||| |||||| | | |||||||| |||||||||||||| ||||||| ||| || Sbjct 977290 AGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAA 977349 Query 4255 ATTGAGTGGGAGCTACAGAAAGAAAACAGCAAACGTTGGAATCCAGAGATTCAGTACA 4312 || || || | ||||||| ||| | | | ||||| || |||| ||| ||| Sbjct 977350 ATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACA 977404 Score = 120 bits (132), Expect = 9e-24 Identities = 193/273 (71%), Gaps = 7/273 (3%) Strand=Plus/Plus Query 2338 GGTCTTGTGCTTCCGGGTTACAAATACCTCGGACCCGGTAACGGACTCGACAAAGGAGAG 2397 || || || |||| || ||||||||| | || || ||||| | ||| |||||||| || Sbjct 976270 GGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAAGAACTTGACAAAGGCGAA 976329 Query 2398 CCGGTCAACGAGGCGGACGCGGCAGCCCTCGAACACGACAAAGCTTACGACCAGCAGCTC 2457 || |||||| |||| ||| | | ||| | || | | || ||| || || ||| Sbjct 976330 CCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AGGCCTACCACGCCCAACTC 976387 Query 2458 AAGGCCGGTGACAACCCGTACCTCAAGTACAACCACGCCGACGCC-GAGTTTCAGGAGCG 2516 ||||| | |||||| | ||| | || |||||||||||| ||| | |||||||||||| | Sbjct 976388 AAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAACGACAGAGTTTCAGGAGAG 976447 Query 2517 TCTTCAAG--AAGATACGTCTTTTGGGGGCAACCTTGGCAGAGCAGTCTTCCAGGCCAAA 2574 || ||| || ||| || || || |||||||| | | ||| || ||| |||| Sbjct 976448 ACTCTAAGGCAACATA--TCCTTCCTGGACAACCTTGCAAAGGGAGTGTTTCAGACCAAG 976505 Query 2575 AAGAGGATCCTTGAGCCTCTTGGTCTGGTTGAG 2607 ||| |||| || || ||||||||||| ||| Sbjct 976506 AAGCGGATACTCGAAGTGCTTGGTCTGGTAGAG 976538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14919317312635