Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_001829.1 Length=4767 Score E Sequences producing significant alignments: (Bits) Value seq1723 233 6e-58 >seq1723 Length=1657771 Score = 233 bits (258), Expect = 6e-58 Identities = 459/676 (68%), Gaps = 36/676 (5%) Strand=Plus/Plus Query 1041 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGCGGGATCACGTCAGAAAAGCAATGGATC 1100 ||| ||| ||| || ||||| |||| | ||| | || |||||| ||| |||||||| Sbjct 974827 TACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTCAGAGAAGGAATGGATC 974885 Query 1101 CAGGAGGACCAGGCGTCCTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCACAAATC 1160 || ||||| ||||| |||||| | | | ||| || | || | ||| | || ||| Sbjct 974886 CAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGGCAGTCGGGCTCAGATC 974945 Query 1161 AAGGCCGCGCTGGACAATGCCTCCAAAATCATGAGCCTGACAAAGACGGCTCCGGACTAC 1220 |||||||| || ||||| | |||| |||| || || || ||||| ||| |||||| Sbjct 974946 AAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACCAAGACCGCTGTAGACTAC 975005 Query 1221 CTGGTGGGCCAGAACCCGCCGGAGGACATTTCCAGCAACCGCATCTACCGAATCCTCGAG 1280 || || ||| | | | || ||||||||||| || || | || |||| | | Sbjct 975006 CTCGTTGGCAGCCAATCACTGGGAGACATTTCCAGGAATCGTGTGTATGGAATGGCTGGG 975065 Query 1281 ATGAACGGGTACGATCCGCAGTACGCGGCCTCCGTCTTCCTGGGCTGGGCGCAAAAGAAG 1340 | | ||| | || || |||||| | || | | Sbjct 975066 ACTA-----TACTGT------TAGGC--------------TGGGCTAAGTGCCA-----G 975095 Query 1341 TTCGGGAAGAGGAACACCATCTGGCTCTTTGGGCCGGCCACGACGGGTAAAACCAACATC 1400 || || || | |||||||||||||| | ||| |||||||| || || || || || || Sbjct 975096 TTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATT 975155 Query 1401 GCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTGAACTGGACCAATGAGAAC 1460 || || || || || || || ||||| ||||| || || ||||||||||||||||||| | Sbjct 975156 GCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATC 975215 Query 1461 TTTCCGTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACG 1520 ||||| |||||||| | ||| ||||||||| | ||||||||||| || ||||||||||| Sbjct 975216 TTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGACT 975275 Query 1521 GCCAAGGTCGTAGAGAGCGCCAAGGCCATCCTGGGCGGAAGCAAGGTGCGCGTGGACCAA 1580 |||||| || | ||| ||||||| ||||| || | |||||||| | || ||||| Sbjct 975276 GCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGACCAG 975333 Query 1581 AAGTGCAAGTCATCGGCCCAGATCGAC-CCAACTCCCGTGATCGTCACCTCCAACACCAA 1639 |||||||| || || ||||| ||| | | | || || | ||||| |||||| | Sbjct 975334 AAGTGCAAATCTTCTCAGCAGATAGACTCTCAATGCC-TG-GCATCACCAACAACACGGA 975391 Query 1640 CATGTGCGCGGTCATCGACGGAAACTCGACCACCTTCGAGCACCAACAACCACTCCAGGA 1699 |||| | || | ||| | ||| |||||| | ||||| | ||| || | || Sbjct 975392 CATGACGACCGTTGTTGACTGGAACATGACCACGATGGAGCATCGGACACCCCTTGAAGA 975451 Query 1700 CCGGATGTTCAAGTTC 1715 | |||||| ||||| Sbjct 975452 TAGAATGTTCCAGTTC 975467 Score = 123 bits (136), Expect = 8e-25 Identities = 206/296 (70%), Gaps = 5/296 (2%) Strand=Plus/Plus Query 4058 TGCCTGGAATGGTCTGGCAAAACAGAGACATTTACTACCAGGGTCCCATTTGGGCCAAGA 4117 ||||||| ||| ||||| | ||||||| ||| || || |||| |||||||||| Sbjct 977110 TGCCTGGCCAGGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGA 977167 Query 4118 TTCCTCATACCGATGGACACTTTCACCCCTCACCGCTGATTGGTGGGTTTGGGCTGAAAC 4177 | ||||| | ||||||||||| || || || | | || || || | |||||||| Sbjct 977168 TCCCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGA 977227 Query 4178 ACCCGCCTCCTCAAATTTTTATCAAGAACACCCCGGTACCTGCGAATCCTGCAACGACCT 4237 || | ||||| || || ||||||||||| ||||| | ||| || ||| |||||| | Sbjct 977228 GACCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATAT 977287 Query 4238 TCAGCTCTACTCCGGTAAACTCCTTCATTACTCAGTACAGCACTGGCCAGGTGTCGGTGC 4297 ||||| || | | | |||| || || || |||||| |||||||||||| | || Sbjct 977288 TCAGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCA 977347 Query 4298 AGATTGACTGGGAGATCCAGAAGGAGCGGTCCAAACGCTGGAACCCCGAGGTCCAG 4353 | || || || | |||| ||| ||| | | |||||| ||| || ||||| Sbjct 977348 AAATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAG 977400 Score = 114 bits (126), Expect = 4e-22 Identities = 190/272 (70%), Gaps = 3/272 (1%) Strand=Plus/Plus Query 2386 GGTCTTGTGCTTCCGGGTTACAAATACCTCGGACCCGGCAACGGACTCGACAAGGGGGAA 2445 || || || |||| || ||||||||| | || || || || | ||| ||||| || ||| Sbjct 976270 GGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAAGAACTTGACAAAGGCGAA 976329 Query 2446 CCCGTCAACGCAGCGGACGCGGCAGCCCTCGAGCACGACAAGGCCTACGACCAGCAGCTC 2505 || |||||| || ||| | | ||| | ||| | |||||||| || || ||| Sbjct 976330 CCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AGGCCTACCACGCCCAACTC 976387 Query 2506 AAGGCCGGTGACAACCCCTACCTCAAGTACAACCACGCCGACG-CGGAGTTCCAGCAGCG 2564 ||||| | |||||| | || | || |||||||||||| ||| | ||||| ||| || | Sbjct 976388 AAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAACGACAGAGTTTCAGGAGAG 976447 Query 2565 GCTTCAGGGCGACACATCGTTTGGGGGCAACCTCGGCAGAGCAGTCTTCCAGGCCAAAAA 2624 || | ||| ||| ||| || || |||||| | | | ||| || ||| |||| || Sbjct 976448 ACTCTAAGGCAACATATCCTTCCTGGACAACCTTGCAAAGGGAGTGTTTCAGACCAAGAA 976507 Query 2625 GAGGGTTCTTGAACCTCTTGGTCTGGTTGAGC 2656 | || | || ||| ||||||||||| |||| Sbjct 976508 GCGGATACTCGAAGTGCTTGGTCTGGTAGAGC 976539 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 15049714245020