Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_002077.1 Length=4718 Score E Sequences producing significant alignments: (Bits) Value seq1723 235 2e-58 >seq1723 Length=1657771 Score = 235 bits (260), Expect = 2e-58 Identities = 261/343 (76%), Gaps = 5/343 (1%) Strand=Plus/Plus Query 1303 GTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCGGCCACCACGGGCAAGACCAACAT 1362 ||| || || |||||||||||||||| | ||| ||||||||||| |||||||| || || Sbjct 975095 GTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATAT 975154 Query 1363 CGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAA 1422 || || || || || || || ||||| ||||| || || || |||||||||||||||| Sbjct 975155 TGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGAT 975214 Query 1423 CTTTCCCTTCAATGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGAC 1482 |||||| ||||| || | ||| ||||||||| | ||||||||||| || ||||||||||| Sbjct 975215 CTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGAC 975274 Query 1483 GGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCA 1542 |||||| || | ||| | ||||||| || || || | ||||||||| | || ||||| Sbjct 975275 TGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGACCA 975332 Query 1543 AAAGTGCAAGTCGTCCGCCCAGATCGAC-CCCACCCCCGTGATCGTCACCTCCAACACCA 1601 |||||||| || || ||||| ||| | || || || | ||||| |||||| Sbjct 975333 GAAGTGCAAATCTTCTCAGCAGATAGACTCTCAATGCC-TG-GCATCACCAACAACACGG 975390 Query 1602 ACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCA 1644 ||||| |||| ||||| |||||| ||||| | ||||| Sbjct 975391 ACATGACGACCGTTGTTGACTGGAACATGACCACGATGGAGCA 975433 Score = 140 bits (154), Expect = 1e-29 Identities = 213/300 (71%), Gaps = 9/300 (3%) Strand=Plus/Plus Query 4029 CCTGGCATGGTGTGGCAAGATAGAGACGTGTACCTGCAGGGTCCCATTTGGGCCAAAATT 4088 |||||| ||| ||||| || ||||| | |||||||| || |||| |||||||| || Sbjct 977112 CCTGGCCAGGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATC 977169 Query 4089 CCTCACACAGATGGACACTTTCACCCGTCTCCTCTTATGGGCGGCTTTGGACTCAAGAAC 4148 ||||||| ||||||||||| || || |||| | ||| ||||| | || || |||| Sbjct 977170 CCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGA 977229 Query 4149 CCGCCTCCTCAGATCCTCATCAAAAACACGCCTGTTCCTGCGAATCCTCCGGCGGAGTTT 4208 || | |||||||| ||||||| ||||| || || | ||| || ||||| || | | Sbjct 977230 CCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACG--ATAT 977287 Query 4209 TCAG--CTACAAAGTTTGCTTCATTCATCACCCAATACTCCACAGGACAAGTGAGTGTGG 4266 |||| || | ||| | | || |||||||| |||||||| || || || | || Sbjct 977288 TCAGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCA 977347 Query 4267 AAATTGAATGGGAGCTGCAGAAAGAAAACAGCAAGCGCTGGAATCCCGAAGTGCAGTACA 4326 |||| ||| || || ||||||| ||| | ||| |||||| ||| | | ||| ||| Sbjct 977348 AAATGGAA---GATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACA 977404 Score = 107 bits (118), Expect = 6e-20 Identities = 201/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 2334 AAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAAC 2393 ||| ||| |||| | | || || || |||| ||| ||||| ||| | || || || Sbjct 976252 AAGAAGGTCGACACCAGAGGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAA 976311 Query 2394 GGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAG 2453 | ||| ||||| || || || |||||| ||| ||| | | ||| | ||| | || Sbjct 976312 GAACTTGACAAAGGCGAACCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AG 976369 Query 2454 GCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2513 |||||| || || ||||| || | |||||||| ||| || || ||||||||| || Sbjct 976370 GCCTACCACGCCCAACTCAAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAAC 976429 Query 2514 GCC-GAGTTTCAGGAGCGTCTGCAAG--AAGATACGTCTTTTGGGGGCAACCTCGGGCGA 2570 | | |||||||||||| | || ||| || ||| || || || |||||| | Sbjct 976430 GACAGAGTTTCAGGAGAGACTCTAAGGCAACATA--TCCTTCCTGGACAACCTTGCAAAG 976487 Query 2571 GCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAG 2621 | ||| || ||| ||||||||||| | |||||| || |||||||| ||| Sbjct 976488 GGAGTGTTTCAGACCAAGAAGCGGATACTCGAAGTGCTTGGTCTGGTAGAG 976538 Score = 86.0 bits (94), Expect = 2e-13 Identities = 133/189 (70%), Gaps = 1/189 (1%) Strand=Plus/Plus Query 1004 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1063 ||| ||| ||| || ||||| |||| | |||| || || |||||| | |||||| Sbjct 974827 TACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTCAGAGAAGGAATGGATC 974885 Query 1064 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCTTCCAACTCGCGGTCCCAGATC 1123 || ||||| |||||||| ||| | | | ||| || | || | ||| | |||||| Sbjct 974886 CAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGGCAGTCGGGCTCAGATC 974945 Query 1124 AAGGCCGCTCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1183 |||||||| || ||||| | | |||||||| | ||| ||||| |||| |||||| Sbjct 974946 AAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACCAAGACCGCTGTAGACTAC 975005 Query 1184 CTGGTAGGC 1192 || || ||| Sbjct 975006 CTCGTTGGC 975014 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14893874008755