Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_004828.1 Length=4694 Score E Sequences producing significant alignments: (Bits) Value seq1723 181 3e-42 >seq1723 Length=1657771 Score = 181 bits (200), Expect = 3e-42 Identities = 261/360 (73%), Gaps = 11/360 (3%) Strand=Plus/Plus Query 1225 AACACGCTGTGGCTGTTCGGACATGCGACCACCGGCAAGACCAACATCGCGGAGGCTATT 1284 ||||| | ||||| | || | || ||||| |||||||| || || || ||||||||| Sbjct 975108 AACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATTGCTGAGGCTATT 975167 Query 1285 GCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAAC 1344 || ||||||||||| ||||||||||| || ||||||||||| |||| |||||| |||||| Sbjct 975168 GCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATCTTTCCATTCAAC 975227 Query 1345 GACTGCGTCGAAAAAATGATTATCTGGTGGGAGGAGGGCAAAATGACCGCCAAAGTGGTG 1404 |||| ||| || || ||| | ||||||||||| || ||||| ||||| ||||| | | Sbjct 975228 GACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGACTGCCAAGATCCTT 975287 Query 1405 GAAACAGCCAAGGCGATTCTGGGAGGATCTC-GGGTGAGAGTGGACCAAAAATGCAAAGC 1463 || | |||||| ||| || || ||| | ||| ||||| ||||| || |||||| | Sbjct 975288 GAGGCTGCCAAG--GATCCTAGG-GGACAGCAAGGTTAGAGTCGACCAGAAGTGCAAATC 975344 Query 1464 TTCGGTTCCGATCGA--ACCGACGCCGGTCATTATTACCAGTAACACCAACATGTGTTAT 1521 ||| | ||| || | | ||| | | || |||| ||||| ||||| Sbjct 975345 TTCTCAGCAGATAGACTCTCAATGCCTGGC---ATCACCAACAACACGGACATGACGACC 975401 Query 1522 GTCATCGACGGGAACACGACCACGTTCGAGCATAAG-CAGCCGTTGGAGGACAGGATGTT 1580 || | ||| |||||| ||||||| | |||||| | || || || || || || ||||| Sbjct 975402 GTTGTTGACTGGAACATGACCACGATGGAGCATCGGACACCCCTT-GAAGATAGAATGTT 975460 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14817544097115