Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_005889.1 Length=4693 Score E Sequences producing significant alignments: (Bits) Value seq1723 156 1e-34 >seq1723 Length=1657771 Score = 156 bits (172), Expect = 1e-34 Identities = 178/238 (75%), Gaps = 2/238 (1%) Strand=Plus/Plus Query 4030 GGTGTGGCAGGACAGAGACATTTACTACCAAGGGCCCATTTGGGCCAAAATTCCACACAC 4089 ||| |||||||| ||||||| ||| ||||| |||| |||||||| || || |||| Sbjct 977120 GGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATCCCTCACAT 977177 Query 4090 GGATGGACACTTTCACCCGTCTCCTCTCATTGGCGGATTTGGACTGAAAAGCCCGCCTCC 4149 |||||||||||| || || |||| | || |||||| | || ||||| || || | || Sbjct 977178 GGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGACCTCTGCC 977237 Query 4150 ACAAATATTCATCAAAAACACTCCTGTACCCGCCAATCCCGCAACGACCTTCTCTCCGGC 4209 || ||||||||||| |||||||| || | ||||| || |||||| ||| || || Sbjct 977238 TCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTCAGCCCTGC 977297 Query 4210 CAGAATCAACAGCTTCATCACCCAGTACAGCACCGGACAGGTGGCTGTCAAAATAGAA 4267 || |||||| || |||||||||||| ||| || ||||| | |||||||| ||| Sbjct 977298 CAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAAATGGAA 977355 Score = 111 bits (122), Expect = 5e-21 Identities = 377/588 (64%), Gaps = 37/588 (6%) Strand=Plus/Plus Query 1009 CAAGACTTCCCAGAAATACATGGCGCTGGTAAGCTGGCTGGTGGAACATGGCATCACTTC 1068 ||||| | || |||| ||| |||| ||| | | |||||| ||||||| |||| || || Sbjct 974811 CAAGAGTGCCGAGAATTACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTC 974869 Query 1069 CGAGAAGCAGTGGATTCAGGAGAATCAGGAGAGCTACCTGTCCTTCAACTCCACGGGAAA 1128 |||||| | ||||| || ||| |||||| ||||||| | | ||| | | Sbjct 974870 AGAGAAGGAATGGATCCAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGG 974929 Query 1129 CTCTCGGAGCCAGATTAAAGCCGCGCTTGACAACGCGTCAAAAATTATGAGTCTGACCAA 1188 | |||| ||||| || ||||| ||||||||| || | || || | || || ||||| Sbjct 974930 CAGTCGGGCTCAGATCAAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACCAA 974989 Query 1189 ATCTGCCTCAGACTATCTCGTGGGACAGACTGTTCCAGAG-GACATTTCTGAAAACAG-A 1246 | || |||||| ||||| || ||| | | | | | |||||||| ||| | Sbjct 974990 GACCGCTGTAGACTACCTCGTTGG-CAGCCAATCACTGGGAGACATTTC------CAGGA 975042 Query 1247 ATCTGGCAGATTTTTGATCTCAACGGCTACGACCCGGCATACGCGGGCTCTGTTCTCTAC 1306 ||| | | | || || |||| ||| |||| |||| Sbjct 975043 ATCGTG----TGTATGG----AATGGCTGGGACT----ATAC--------TGTTA----- 975077 Query 1307 GGCTGGTGCACTCGCGCCTTTGGAAAGAGGAACACCGTCTGGCTGTATGGACCCGCGACC 1366 |||||| | || ||||| || | |||||| ||||||| ||||| || || ||| Sbjct 975078 GGCTGGGCTAAGTGCCAGTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACC 975137 Query 1367 ACCGGAAAGACCAACATCGCGGAAGCCATCTCTCACACCGTGCCCTTTTATGGCTGTGTG 1426 || || ||||| || || || || || || | || | ||||| || ||||| |||||| Sbjct 975138 ACTGGCAAGACAAATATTGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTG 975197 Query 1427 AACTGGACTAATGAGAACTTNNNNNNNNNNNNNNNNNNNGAAAAAATGTTGATCTGGTGG 1486 |||||||| ||||||| ||| || || ||| | ||||||||| Sbjct 975198 AACTGGACCAATGAGATCTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTGG 975257 Query 1487 GAGGAGGGAAAGATGACCAGCAAGGTGGTGGAACCCGCCAAGGCCATCTTgggggggTCT 1546 || || || |||||||| |||| | | || | ||||||| ||| | |||| Sbjct 975258 GAAGAAGGCAAGATGACTGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAGC 975315 Query 1547 AGAGTACGAGTGGATCAAAAATGTAAATCCTCTGTACAAGTAGACTCT 1594 | || |||| || || || || ||||| ||| || |||||||| Sbjct 975316 AAGGTTAGAGTCGACCAGAAGTGCAAATCTTCTCAGCAGATAGACTCT 975363 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14814363684130