Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006147.2 Length=5132 Score E Sequences producing significant alignments: (Bits) Value seq1723 150 6e-33 >seq1723 Length=1657771 Score = 150 bits (166), Expect = 6e-33 Identities = 131/163 (80%), Gaps = 0/163 (0%) Strand=Plus/Plus Query 1539 CCATATGGCTCTACGGACCTGCGACCACCGGAAAGACCAACATAGCCGAGGCTATTGCCC 1598 |||| ||||| || || || || ||||| || ||||| || || || ||||||||||| | Sbjct 975112 CCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATTGCTGAGGCTATTGCAC 975171 Query 1599 ATGCTGTACCCTTCTATGGCTGTGTTAACTGGACTAATGAGAACTTCCCATTTAATGACT 1658 ||||||| || |||||||| ||||| |||||||| ||||||| ||| ||||| || |||| Sbjct 975172 ATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATCTTTCCATTCAACGACT 975231 Query 1659 GCGTTGATAAAATGCTTATATGGTGGGAGGAGGGAAAAATGAC 1701 ||| || || ||||| || |||||||| || || || ||||| Sbjct 975232 TCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGAC 975274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 16210564984545