Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006148.1 Length=4432 Score E Sequences producing significant alignments: (Bits) Value seq1723 105 2e-19 >seq1723 Length=1657771 Score = 105 bits (116), Expect = 2e-19 Identities = 133/180 (74%), Gaps = 2/180 (1%) Strand=Plus/Plus Query 1275 TTTGGCAAGAGAAACACCATCTGGCTGTATGGTCCAGCTACTACCGGCAAAACCATCATC 1334 ||||| || | |||||||||||||| ||||| || || || || ||||| || | || Sbjct 975096 TTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATT 975155 Query 1335 GCTCAAGCTATTGCACATGCTGTTAAACTGTTTGCTGGTGTTAATTGGACTAATGAAAAC 1394 ||| | ||||||||||||||||| | | || |||| || ||||| ||||| | | Sbjct 975156 GCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATC 975215 Query 1395 TTTCCCTTCTGTAACTGTCCAGG-GAAACTGCTTATCTGGTGGGAGGAGGGCAAGATGAC 1453 ||||| ||| ||| || || || |||| ||||||||||| || ||||||||||| Sbjct 975216 TTTCCATTCAACGACT-TCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGAC 975274 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13984275895045