Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006152.1 Length=4642 Score E Sequences producing significant alignments: (Bits) Value seq1723 223 1e-54 >seq1723 Length=1657771 Score = 223 bits (246), Expect = 1e-54 Identities = 397/575 (69%), Gaps = 41/575 (7%) Strand=Plus/Plus Query 1000 CAAGACTTCCCAGAAATACATGGCGCTCGTCAACTGGCTCGTGGAGCACGGCATCACTTC 1059 ||||| | || |||| ||| |||| || ||||||||||| |||| ||||||| || || Sbjct 974811 CAAGAGTGCCGAGAATTACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTC 974869 Query 1060 CGAGAAGCAGTGGATCCAGGAAAATCAGGAGAGCTACCTCTCCTTCAACTCCA---CCGG 1116 |||||| | |||||||| || |||||| |||||| | | ||| | | || Sbjct 974870 AGAGAAGGAATGGATCCAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGG 974929 Query 1117 CAACTCTCGGAGCCAGATCAAGGCCGCGCTCGACAACGCGACCAAAATTATGAGTCTGAC 1176 || |||| |||||||||||||| || |||||| || |||| || | || || || Sbjct 974930 CAG---TCGGGCTCAGATCAAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCAC 974986 Query 1177 AAAAAGCGCGGTGGACTACCTCGTGGGGAGCTCCGTTCCCGAG-GACATTTCAAAAAACA 1235 || | ||| || ||||||||||| || ||| | | | | | |||||||| | Sbjct 974987 CAAGACCGCTGTAGACTACCTCGTTGGCAGC-CAATCACTGGGAGACATTTCCAG----- 975040 Query 1236 GAATCTGGCAAATTTTTGAGATGAATGGCTACGACCCGGCCTACGCGGGATCCATCCTCT 1295 ||||| | | | || |||||||| |||| | || || | Sbjct 975041 GAATCGTG----TGTATG----GAATGGCT----------------GGGA-CTATACTGT 975075 Query 1296 ACGGCTGGTGTCAGCGCTCCTTCAACAAGAGGAACACCGTCTGGCTCTACGGACCCGCCA 1355 |||||| | || || || || | |||||| ||||||| || || || |||| Sbjct 975076 TAGGCTGGGCTAAGTGCCAGTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCA 975135 Query 1356 CGACCGGCAAGACCAACATCGCGGAGGCCATCGCCCACACTGTGCCCTTTTACGGCTGCG 1415 | || |||||||| || || || ||||| || || || ||||||| || || || || | Sbjct 975136 CCACTGGCAAGACAAATATTGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTG 975195 Query 1416 TGAACTGGACCAATGAAAACTTTCCCTTTAATGACTGTGTGGACAAAATGCTCATTTGGT 1475 |||||||||||||||| | |||||| || || |||| |||||||| |||||||| |||| Sbjct 975196 TGAACTGGACCAATGAGATCTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGT 975255 Query 1476 GGGAGGAGGGAAAGATGACCAACAAGGTGGTTGAATCCGCCAAGGCCATCCTGGGGGGCT 1535 |||| || || |||||||| |||| | |||| | ||||||| ||||| |||| | Sbjct 975256 GGGAAGAAGGCAAGATGACTGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACA 975313 Query 1536 CAAAGGTGCGGGTCGATCAGAAATGTAAATCCTCT 1570 ||||| | ||||| ||||| || ||||| ||| Sbjct 975314 GCAAGGTTAGAGTCGACCAGAAGTGCAAATCTTCT 975348 Score = 96.9 bits (106), Expect = 1e-16 Identities = 205/301 (68%), Gaps = 10/301 (3%) Strand=Plus/Plus Query 3978 TGCCCGGCAGCGTGTGGATGGAGAGGGACGTGTACCTCCAAGGACCCATCTGGGCCAAGA 4037 |||| ||| || ||| |||||| || | ||||| |||||| ||||||||||||||| Sbjct 977110 TGCCTGGCCAGGTTTGGCAGGAGAG--ACATCTACCTGCAAGGATCCATCTGGGCCAAGA 977167 Query 4038 TCCCAGAGACGGGGGCGCACTTTCACCCCTCTCCGGCCATGGGCGGATTCGGACTCAAAC 4097 |||| | | || | ||||| || || |||| || |||||| |||| || || Sbjct 977168 TCCCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGA 977227 Query 4098 ACCCACCGCCCATGATGCTCATCAAGAACACGCCTGTGCCCGGAAATATCACCA--GCTT 4155 || | ||| ||| ||||||||||||| || |||| | || | ||| | | Sbjct 977228 GACCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAA-CCCTCCAACGATA 977286 Query 4156 CTCGGACGTGCC--CGTCAGCAGCTTCATCACCCAGTACAGCACCGGGCAGGTCACCGTG 4213 || | | |||| ||| | || |||||||||||| ||| || ||||||||||| Sbjct 977287 TTCAGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTC 977346 Query 4214 GAGATGGAGTGGGAGCTCAAGAAGGAAAACTCCAAGAGGTGGAACCCAGAGATCCAGTAC 4273 | ||||| || | |||| || |||||| || ||||| || |||||||| || Sbjct 977347 AAAATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCAC 977403 Query 4274 A 4274 | Sbjct 977404 A 977404 Score = 82.4 bits (90), Expect = 2e-12 Identities = 118/165 (72%), Gaps = 1/165 (1%) Strand=Plus/Plus Query 2438 TACAACGAGCAGCTTGAGGCGGGAGACAACCCCTACCTCAAGTACAACCACGCGGACGCC 2497 ||| ||| || || |||| | ||||| | || | || ||||||||||| ||| | Sbjct 976373 TACCACGCCCAACTCAAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAACGAC 976432 Query 2498 -GAGTTTCAGGAGAAGCTCGCCGACGACACATCCTTCGGGGGAAACCTCGGAAAGGCAGT 2556 ||||||||||||| ||| | | ||| ||||||| || ||||| | ||||| ||| Sbjct 976433 AGAGTTTCAGGAGAGACTCTAAGGCAACATATCCTTCCTGGACAACCTTGCAAAGGGAGT 976492 Query 2557 CTTTCAGGCCAAGAAAAGGGTTCTCGAACCTTTTGGCCTGGTTGA 2601 |||||| ||||||| || | |||||| |||| ||||| || Sbjct 976493 GTTTCAGACCAAGAAGCGGATACTCGAAGTGCTTGGTCTGGTAGA 976537 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14652162621895