Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006260.1 Length=4721 Score E Sequences producing significant alignments: (Bits) Value seq1723 246 9e-62 >seq1723 Length=1657771 Score = 246 bits (272), Expect = 9e-62 Identities = 444/645 (69%), Gaps = 42/645 (7%) Strand=Plus/Plus Query 1003 TACATGGAGCTGGTCGGGTGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATC 1062 ||| ||| ||| || ||||| |||| | |||| || || |||||| | |||||| Sbjct 974827 TACCTGGCTCTGCTCAACTGGCTCTTGGAACACGGCA-CATGTCAGAGAAGGAATGGATC 974885 Query 1063 CAGGAGGACCAGGCCTCGTACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATC 1122 || ||||| |||||||| ||| | | | ||| || | || | ||| | |||||| Sbjct 974886 CAAGAGGATCAGGCCTCCTACCTGACATACAATGCTGGGTCTGGCAGTCGGGCTCAGATC 974945 Query 1123 AAGGCCGCGCTGGACAATGCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTAC 1182 |||||||| || ||||| | | |||||||| | ||| ||||| |||| |||||| Sbjct 974946 AAGGCCGCACTTGACAACACGGCCAAGATCAGGATGCTCACCAAGACCGCTGTAGACTAC 975005 Query 1183 CTGGTGGG--GCCC-TCGCTGCCCGCGGACATTAAAACCAACCGCATCTACCGCATCCTG 1239 || || || ||| || ||| | |||||| | || || | || | || Sbjct 975006 CTCGTTGGCAGCCAATCACTG---GGAGACATTTCCAGGAATCGTGTGTATGGAATG--- 975059 Query 1240 GAGCTGAACGGGTACGATCCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCCCAGAAA 1299 |||| | || || ||| | |||||||| || Sbjct 975060 --GCTG-----GGACTATACTGT--------------------TAGGCTGGGCTAAGTGC 975092 Query 1300 AAGTTCGGGAAGCGCAACACCATCTGGCTGTTTGGGCCCGCCACCACCGGCAAGACCAAC 1359 |||| || || |||||||||||||||| | ||| || |||||||| |||||||| || Sbjct 975093 CAGTTTGGTAAAGGCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAAT 975152 Query 1360 ATTGCGGAAGCCATCGCCCACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAG 1419 ||||| || || || || || || ||||| ||||| || || || ||||||||||||||| Sbjct 975153 ATTGCTGAGGCTATTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAG 975212 Query 1420 AACTTTCCCTTCAACGATTGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATG 1479 | |||||| |||||||| | ||| ||||||||| | ||||||||||| || ||||||||| Sbjct 975213 ATCTTTCCATTCAACGACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATG 975272 Query 1480 ACGGCCAAGGTCGTGGAGTCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGAC 1539 || |||||| || | ||| | ||||||| || || || | ||||||||| | || ||| Sbjct 975273 ACTGCCAAGATCCTTGAGGCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGAC 975330 Query 1540 CAAAAGTGCAAGTCGTCCGCCCAGATCGAC-CCCACCCCCGTGATCGTCACCTCCAACAC 1598 || |||||||| || || ||||| ||| | || || || | ||||| |||||| Sbjct 975331 CAGAAGTGCAAATCTTCTCAGCAGATAGACTCTCAATGCC-TG-GCATCACCAACAACAC 975388 Query 1599 CAACATGTGCGCCGTGATTGACGGGAACAGCACCACCTTCGAGCA 1643 ||||| |||| ||||| |||||| ||||| | ||||| Sbjct 975389 GGACATGACGACCGTTGTTGACTGGAACATGACCACGATGGAGCA 975433 Score = 134 bits (148), Expect = 4e-28 Identities = 216/309 (70%), Gaps = 5/309 (2%) Strand=Plus/Plus Query 4031 CCTGGCATGGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATT 4090 |||||| ||| |||||| | | ||| | |||||||| || |||||||||||||||| Sbjct 977112 CCTGGCCAGGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATC 977169 Query 4091 CCTCACACGGATGGCAACTTTCACCCGTCTCCTTTGATGGGCGGCTTTGGACTTAAACAT 4150 ||||||| |||||| |||| || || |||| || ||||| | || || || Sbjct 977170 CCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGA 977229 Query 4151 CCGCCTCCTCAGATCCTGATCAAGAACACTCCCGTTCCCGCTAATCCTCCGGAGGTGTTT 4210 || | |||||||| | |||||||||||||| || | || || ||||| | | || Sbjct 977230 CCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTC 977289 Query 4211 ACTCCTGCCAAGTTTGCTTCGTTCATCACACAGTACAGCACCGGACAAGTCAGCGTGGAA 4270 | ||||||||| | | ||| ||||| |||||| ||| || || |||| ||| || Sbjct 977290 AGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAA 977349 Query 4271 ATCGAGTGGGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCGGAGATTCAGTACACC 4330 || || || || |||| || ||| | ||| |||||| || |||| ||| ||| Sbjct 977350 ATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACATG 977406 Query 4331 TCCAACTTT 4339 ||||||| Sbjct 977407 GGCAACTTT 977415 Score = 104 bits (114), Expect = 7e-19 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 2333 AAGCAGGACAACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAAC 2392 ||| ||| | || | | || || || |||| ||| ||||| ||| | || || || Sbjct 976252 AAGAAGGTCGACACCAGAGGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAA 976311 Query 2393 GGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAG 2452 | ||| ||||| || || || |||||| ||| ||| | | ||| | ||| | || Sbjct 976312 GAACTTGACAAAGGCGAACCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AG 976369 Query 2453 GCCTACGACCAGCAGCTCAAAGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2512 |||||| || || ||||| || | |||||||| ||| || || ||||||||| || Sbjct 976370 GCCTACCACGCCCAACTCAAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAAC 976429 Query 2513 GCC-GAGTTTCAGGAGCGTCTGCAAG--AAGATACGTCATTTGGGGGCAACCTCGGGCGA 2569 | | |||||||||||| | || ||| || ||| || || || |||||| | Sbjct 976430 GACAGAGTTTCAGGAGAGACTCTAAGGCAACATA--TCCTTCCTGGACAACCTTGCAAAG 976487 Query 2570 GCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAG 2620 | ||| || ||| ||||||||||| | |||||| || |||||||| ||| Sbjct 976488 GGAGTGTTTCAGACCAAGAAGCGGATACTCGAAGTGCTTGGTCTGGTAGAG 976538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14903415247710