Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006261.1 Length=4393 Score E Sequences producing significant alignments: (Bits) Value seq1723 253 6e-64 >seq1723 Length=1657771 Score = 253 bits (280), Expect = 6e-64 Identities = 435/627 (69%), Gaps = 42/627 (7%) Strand=Plus/Plus Query 920 TGGCTGGTGGACCGGGGCATCACCTCCGAGAAGCAGTGGATCCAGGAGGACCAGGCCTCG 979 ||||| |||| | |||| || || |||||| | |||||||| ||||| |||||||| Sbjct 974845 TGGCTCTTGGAACACGGCA-CATGTCAGAGAAGGAATGGATCCAAGAGGATCAGGCCTCC 974903 Query 980 TACATCTCCTTCAACGCCGCCTCCAACTCGCGGTCCCAGATCAAGGCCGCGCTGGACAAT 1039 ||| | | | ||| || | || | ||| | |||||||||||||| || ||||| Sbjct 974904 TACCTGACATACAATGCTGGGTCTGGCAGTCGGGCTCAGATCAAGGCCGCACTTGACAAC 974963 Query 1040 GCCGGCAAGATCATGGCGCTGACCAAATCCGCGCCCGACTACCTGGTGGG--GCCC-TCG 1096 | | |||||||| | ||| ||||| |||| |||||||| || || ||| || Sbjct 974964 ACGGCCAAGATCAGGATGCTCACCAAGACCGCTGTAGACTACCTCGTTGGCAGCCAATCA 975023 Query 1097 CTGCCCGCGGACATTACCCAGAACCGCATCTACCGCATCCTCGCTCTCAACGGCTACGAC 1156 ||| | |||||| || ||| || | || | || |||| ||| Sbjct 975024 CTG---GGAGACATTTCCAGGAATCGTGTGTATGGAAT-------------GGCTGGGAC 975067 Query 1157 CCTGCCTACGCCGGCTCCGTCTTTCTCGGCTGGGCTCAGAAAAAGTTCGGGAAACGCAAC 1216 | | || | ||||||||| || |||| || ||| ||||| Sbjct 975068 TATACT------------GT-----TAGGCTGGGCTAAGTGCCAGTTTGGTAAAGGCAAC 975110 Query 1217 ACCATCTGGCTGTTTGGACCCGCCACCACCGGCAAGACCAACATTGCGGAAGCCATCGCC 1276 ||||||||||| | ||| || |||||||| |||||||| || ||||| || || || || Sbjct 975111 ACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATTGCTGAGGCTATTGCA 975170 Query 1277 CACGCCGTGCCCTTCTACGGCTGCGTCAACTGGACCAATGAGAACTTTCCCTTCAATGAT 1336 || || ||||| ||||| || || || |||||||||||||||| |||||| ||||| || Sbjct 975171 CATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATCTTTCCATTCAACGAC 975230 Query 1337 TGCGTCGACAAGATGGTGATCTGGTGGGAGGAGGGCAAGATGACGGCCAAGGTCGTGGAG 1396 | ||| ||||||||| | ||||||||||| || ||||||||||| |||||| || | ||| Sbjct 975231 TTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGACTGCCAAGATCCTTGAG 975290 Query 1397 TCCGCCAAGGCCATTCTCGGCGGCAGCAAGGTGCGCGTGGACCAAAAGTGCAAGTCGTCC 1456 | ||||||| || || || | ||||||||| | || ||||| |||||||| || || Sbjct 975291 GCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGACCAGAAGTGCAAATCTTCT 975348 Query 1457 GCCCAGATCGAC-CCCACCCCCGTGATCGTCACCTCCAACACCAACATGTGCGCCGTGAT 1515 ||||| ||| | || || || | ||||| |||||| ||||| |||| | Sbjct 975349 CAGCAGATAGACTCTCAATGCC-TG-GCATCACCAACAACACGGACATGACGACCGTTGT 975406 Query 1516 TGACGGGAACAGCACCACCTTCGAGCA 1542 |||| |||||| ||||| | ||||| Sbjct 975407 TGACTGGAACATGACCACGATGGAGCA 975433 Score = 158 bits (174), Expect = 3e-35 Identities = 210/290 (72%), Gaps = 5/290 (2%) Strand=Plus/Plus Query 3941 GGTCTGGCAGAACCGGGACGTGTACCTGCAGGGTCCCATCTGGGCCAAGATTCCTCACAC 4000 ||| |||||| | | ||| | |||||||| || |||||||||||||||| ||||||| Sbjct 977120 GGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATCCCTCACAT 977177 Query 4001 GGACGGCAACTTCCACCCGTCTCCGCTGATGGGCGGCTTTGGCCTGAAACATCCTCCGCC 4060 ||| || ||||||| || |||| | || ||||| | || ||||| |||| ||| Sbjct 977178 GGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGACCTCTGCC 977237 Query 4061 TCAGATCCTGATCAAGAACACGCCTGTACCTGCGGATCCTCCGACCACCTTCAACCAGTC 4120 |||||| | ||||||||||| || || | ||| | ||||| || | |||| || | Sbjct 977238 TCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTCAGCCCTGC 977297 Query 4121 AAAGCTGAACTCTTTCATCACGCAATACAGCACCGGACAGGTCAGCGTGGAAATTGAATG 4180 ||| | |||| || ||||| || ||| ||| || ||||||| ||| |||| ||| Sbjct 977298 CAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAAATGGAA-- 977355 Query 4181 GGAGCTGCAGAAGGAAAACAGCAAGCGCTGGAACCCCGAGATCCAGTACA 4230 || || |||| || ||| | ||| |||||| ||| |||||||| ||| Sbjct 977356 -GATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACA 977404 Score = 104 bits (114), Expect = 6e-19 Identities = 200/291 (69%), Gaps = 7/291 (2%) Strand=Plus/Plus Query 2232 AAGCAGGACGACGGCCGGGGTCTGGTGCTTCCTGGCTACAAGTACCTCGGACCCTTCAAC 2291 ||| ||| |||| | | || || || |||| ||| ||||| ||| | || || || Sbjct 976252 AAGAAGGTCGACACCAGAGGGCTAGTCCTTCTTGGGTACAAATACTTGGGTCCAGGTAAA 976311 Query 2292 GGACTCGACAAGGGGGAGCCCGTCAACGCGGCGGACGCAGCGGCCCTCGAGCACGACAAG 2351 | ||| ||||| || || || |||||| ||| ||| | | ||| | ||| | || Sbjct 976312 GAACTTGACAAAGGCGAACCAGTCAACCAGGCTGACACTACTGCCAAGGCGCATGG--AG 976369 Query 2352 GCCTACGACCAGCAGCTGCAGGCGGGTGACAATCCGTACCTGCGGTATAACCACGCCGAC 2411 |||||| || || || |||| | |||||||| ||| || || ||||||||| || Sbjct 976370 GCCTACCACGCCCAACTCAAGGCAGCTGACAATCAGTATTTGAAATACAACCACGCCAAC 976429 Query 2412 GCC-GAGTTTCAGGAGCGTCTGCAAG--AAGATACGTCTTTTGGGGGCAACCTCGGGCGA 2468 | | |||||||||||| | || ||| || ||| || || || |||||| | Sbjct 976430 GACAGAGTTTCAGGAGAGACTCTAAGGCAACATA--TCCTTCCTGGACAACCTTGCAAAG 976487 Query 2469 GCAGTCTTCCAGGCCAAGAAGCGGGTTCTCGAACCTCTCGGTCTGGTTGAG 2519 | ||| || ||| ||||||||||| | |||||| || |||||||| ||| Sbjct 976488 GGAGTGTTTCAGACCAAGAAGCGGATACTCGAAGTGCTTGGTCTGGTAGAG 976538 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13860239788630