Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_006263.1 Length=4682 Score E Sequences producing significant alignments: (Bits) Value seq1723 190 6e-45 >seq1723 Length=1657771 Score = 190 bits (210), Expect = 6e-45 Identities = 190/243 (78%), Gaps = 4/243 (2%) Strand=Plus/Plus Query 1225 AACACGCTGTGGCTGTTCGGACCTGCGACCACCGGCAAGACCAACATCGCGGAGGCTATT 1284 ||||| | ||||| | || || || ||||| |||||||| || || || ||||||||| Sbjct 975108 AACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATTGCTGAGGCTATT 975167 Query 1285 GCCCATGCTGTGCCGTTCTATGGATGCGTTAACTGGACCAACGAGAACTTTCCGTTCAAC 1344 || ||||||||||| ||||||||||| || ||||||||||| |||| |||||| |||||| Sbjct 975168 GCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATCTTTCCATTCAAC 975227 Query 1345 GACTGCGTCGAAAAGATGATTATCTGGTGGGAAGAGGGCAAAATGACCGCCAAGGTGGTG 1404 |||| ||| || |||||| | |||||||||||||| ||||| ||||| |||||| | | Sbjct 975228 GACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGACTGCCAAGATCCTT 975287 Query 1405 GAAACGGCTAAAGCGATTCTGGGAGGATCTC-GGGTGAGAGTGGACCAAAAATGCAAAGC 1463 || | || || ||| || || ||| | ||| ||||| ||||| || |||||| | Sbjct 975288 GAGGCTGCCAA--GGATCCTAGG-GGACAGCAAGGTTAGAGTCGACCAGAAGTGCAAATC 975344 Query 1464 TTC 1466 ||| Sbjct 975345 TTC 975347 Score = 113 bits (124), Expect = 1e-21 Identities = 206/297 (69%), Gaps = 15/297 (5%) Strand=Plus/Plus Query 4086 AGAGACATTTACCTCCAAGGACCCATTTGGGCCAAAATCCCCGACACAGACAATCACTTC 4145 |||||||| ||||| |||||| |||| |||||||| ||||| ||| || |||||| Sbjct 977131 AGAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATCCCTCACATGGATGGACACTTC 977190 Query 4146 CATCCGTCCCCGCTTATTGGCGG-GTTTGGCTGCAAGCATCCCCCTCCCCAGATTTTCAT 4204 ||||| || | | ||| ||||| | ||||| ||| || | || ||||| ||||| Sbjct 977191 CATCCATCTCTCCATATAGGCGGACTCGGGCTG-AAGAGACCTCTGCCTCAGATATTCAT 977249 Query 4205 TAAAAACACACCCGTCCCGGCCAACCCTTCGGAAACG---TTCCAGACGGCCAAGGTGGC 4261 || ||||| || || | ||||||||| | |||| ||| | |||||| | Sbjct 977250 CAAGAACACTCCGGTGCTTGCCAACCCTCC---AACGATATTCAGCCCTGCCAAGATCAA 977306 Query 4262 CTCCTTCATCAACCAGTACTCGACCGGACAGTGCACCGTCGAAATCTTTTGG--GAACTC 4319 || || |||| ||||||||| || || ||| ||||||| ||| ||| || | Sbjct 977307 CTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAAA-----TGGAAGATTTG 977361 Query 4320 AAGAAGGAAACCTCCAAGCGCTGGAACCCCGAAATCCAGTTCACCTCCAACTTTGGC 4376 |||| || | |||| ||| |||||| ||| | |||||| || ||||||| || Sbjct 977362 GAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACATGGGCAACTTTAGC 977418 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14779379141295