Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_014468.1 Length=4286 Score E Sequences producing significant alignments: (Bits) Value seq1723 212 2e-51 >seq1723 Length=1657771 Score = 212 bits (234), Expect = 2e-51 Identities = 201/256 (79%), Gaps = 2/256 (1%) Strand=Plus/Plus Query 1158 GCAACACCGTCTGGCTCTTCGGGCCGGCCACGACCGGCAAGACGAACCTCGCCGAGGCCA 1217 |||||||| ||||||| | || |||||||| || |||||||| || | || ||||| | Sbjct 975106 GCAACACCATCTGGCTTTATGGCCCGGCCACCACTGGCAAGACAAATATTGCTGAGGCTA 975165 Query 1218 TCAGCCACTCGGTGCCCTTCTACGGCTGCGTCAACTGGACCAACGAGAACTTCCCCTTCA 1277 | || | ||||| ||||| || || || ||||||||||| |||| ||| || |||| Sbjct 975166 TTGCACATGCTGTGCCTTTCTATGGATGTGTGAACTGGACCAATGAGATCTTTCCATTCA 975225 Query 1278 ACGACTGCGTGGACAAGATGATCATCTGGTGGGAGGAGGGCAAGATGACGTCCAAGGTCG 1337 |||||| ||||||||||||| ||||||||||||| || ||||||||||| ||||| || Sbjct 975226 ACGACTTCGTGGACAAGATGCTCATCTGGTGGGAAGAAGGCAAGATGACTGCCAAGATCC 975285 Query 1338 TCGAGAGCGCCAAGGCCATCCTCGGCGGCAGCAAGGTGCGCGTCGACCAGAAGTGCAAGA 1397 | ||| ||||||| ||||| || | ||||||||| | ||||||||||||||||| Sbjct 975286 TTGAGGCTGCCAAGG--ATCCTAGGGGACAGCAAGGTTAGAGTCGACCAGAAGTGCAAAT 975343 Query 1398 ACTCGCAGCAGATCGA 1413 || |||||||| || Sbjct 975344 CTTCTCAGCAGATAGA 975359 Score = 168 bits (186), Expect = 2e-38 Identities = 217/298 (73%), Gaps = 5/298 (2%) Strand=Plus/Plus Query 3829 CCGGGCATGGTCTGGCAGGACCGCGACATCTACCTGCAGGGCCCGATATGGGCCAAGATC 3888 || ||| ||| |||||||| | |||||||||||||| || | || |||||||||||| Sbjct 977112 CCTGGCCAGGTTTGGCAGGA--GAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATC 977169 Query 3889 CCGGAGACGGACGGCCACTTCCACCCGTCCCCGCTCATGGGCGGCTTCGGGCTCAAGAAC 3948 || | | ||| || |||||||| || || | | || ||||| ||||||| |||| Sbjct 977170 CCTCACATGGATGGACACTTCCATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGA 977229 Query 3949 CCGCCGCCGCAGATCCTCGTCAAGAACACGCCCGTGCCCGCCGTGCCGCCCACGACCTTC 4008 || | ||| ||||| || |||||||||| || |||| ||| || || |||| ||| Sbjct 977230 CCTCTGCCTCAGATATTCATCAAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTC 977289 Query 4009 ACACCGCAGAAGGTCAACTCCTTCATCACGCAGTACTCCACCGGCCAGGTCACCGTCGAG 4068 | || ||| |||||| || ||||| ||||||||||| ||||||||||||||| | Sbjct 977290 AGCCCTGCCAAGATCAACTTGTTTATCACCCAGTACTCCACTGGCCAGGTCACCGTCAAA 977349 Query 4069 ATCGAGTGGGAGCTGCGCAAGGAGAAGAGCAAGCGCTGGAACCCCGAGATCCAGTACA 4126 || || || || || ||||| | ||| |||||| ||| |||||||| ||| Sbjct 977350 ATGGA---AGATTTGGAGAAAGAGAACTCCGAGCACTGGAAGCCCAAGATCCAGCACA 977404 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 13519935599235