Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_024888.1 Length=4733 Score E Sequences producing significant alignments: (Bits) Value seq560 230 7e-57 >seq560 Length=1076375 Score = 230 bits (254), Expect = 7e-57 Identities = 257/342 (75%), Gaps = 1/342 (0%) Strand=Plus/Minus Query 1203 TGGACCTGCAAGCACAGGAAAAAGCCTACTAGCTCAAAAAATAGCAAAATTAGTTGGTAA 1262 ||||||||| ||||| ||||||||| | | || ||| ||||| | | ||||||| Sbjct 39991 TGGACCTGCCAGCACTGGAAAAAGCATTATTGCACAAGTCATAGCTCAGTGTATTGGTAA 39932 Query 1263 CACAGGCTGCTACAATCCAAGCAATGCCAACTTCCCATTCAATGACTGTGTAAACAAAAA 1322 ||||| |||||| || |||| ||||| ||||| ||||||||| |||||||| Sbjct 39931 TGTTGGCTGTTACAATGCAGCAAATGTGAACTTTCCATTTAATGACTGTACCAACAAAAA 39872 Query 1323 CCTAATCTGGATAGAAGAAGCAGGCAACCTAGGCACTCAAGTTAACTCTTTCAAAGCCAT 1382 |||||| ||| |||||||||| || ||| | | | ||||| ||| || ||||| || Sbjct 39871 CCTAATATGGGTAGAAGAAGCGGGAAACTTTAGTAACCAAGTAAACCAATTTAAAGCTAT 39812 Query 1383 CATGAGTGGCCAAGCAATCAGACTTGACCAAAAAGGCAAAGGCAGCAAATCAATTGAACC 1442 || ||| | || ||| ||||| ||||||||||||||||||| ||| ||||| Sbjct 39811 TTGTTCAGGTCAAACTATAAGAATTGACTAAAAAGGCAAAGGCAGCAAGCAAATAGAACC 39752 Query 1443 AACTCCAGTAATCATGACAACCAATGAAGACATCACCAAAGTAATAGTTGGCACAGAACT 1502 ||||||||| || ||||||||||||||||||||||||||||| | | ||||| ||| Sbjct 39751 AACTCCAGTTATAATGACAACCAATGAAGACATCACCAAAGTTAGAATTGGCTGTGAAGA 39692 Query 1503 CAAAACAGAACACAGACAACCAATAATGGATAG-ATGCTTAA 1543 | | ||||||||| |||||||| | ||||| ||||| || Sbjct 39691 AAGACCAGAACACACTCAACCAATCAGAGATAGAATGCTCAA 39650 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14941580203530