Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_026815.1 Length=4613 Score E Sequences producing significant alignments: (Bits) Value seq560 300 5e-78 >seq560 Length=1076375 Score = 300 bits (332), Expect = 5e-78 Identities = 307/401 (77%), Gaps = 0/401 (0%) Strand=Plus/Minus Query 1201 AAGTATTTCATGCAATGATGTGCTGTCTAAACAAACAAATGGGCAAAAGAAACACAATCT 1260 ||||||| ||||| ||||| || |||||||| || | | |||| | |||||||| Sbjct 40058 AAGTATTACATGCTATGATCTGTGTTCTAAACAGACCAGGAGACAAACGGAACACAATTC 39999 Query 1261 TACTTTGTGGTCCAGCAAGTACTGGAAAAAGCCTAATAGCACAAAAAATTGCTCAATTGG 1320 || | ||| || || || |||||||||||| | || |||||| || ||||| | Sbjct 39998 TATTACATGGACCTGCCAGCACTGGAAAAAGCATTATTGCACAAGTCATAGCTCAGTGTA 39939 Query 1321 TTGGTAATGTAGGATGCTACAATCCAAGCAATGTTAACTTTCCATTCAACGATTGTAGCA 1380 |||||||||| || || |||||| || ||||| ||||||||||| || || |||| || Sbjct 39938 TTGGTAATGTTGGCTGTTACAATGCAGCAAATGTGAACTTTCCATTTAATGACTGTACCA 39879 Query 1381 ACAAAAACCTAATATGGATAGAAGAAGCAGGAAACTTTGGAACTCAAGTAAACCAATTTA 1440 ||||||||||||||||| |||||||||| ||||||||| | | |||||||||||||||| Sbjct 39878 ACAAAAACCTAATATGGGTAGAAGAAGCGGGAAACTTTAGTAACCAAGTAAACCAATTTA 39819 Query 1441 AAGCAATCATGAGTGGCCAAGCAATTAGACTAGACCAAAAAGGCAAAGGTAGCAAAACCA 1500 |||| || || ||| | || ||| | ||| ||||||||||||| ||||| | Sbjct 39818 AAGCTATTTGTTCAGGTCAAACTATAAGAATTGACTAAAAAGGCAAAGGCAGCAAGCAAA 39759 Query 1501 TCGAACCAACTCCAGTTATAATGACAACAAATGAAGACATAACAAGAGTTGTGGTAGGGT 1560 | |||||||||||||||||||||||||| ||||||||||| || | |||| | || | Sbjct 39758 TAGAACCAACTCCAGTTATAATGACAACCAATGAAGACATCACCAAAGTTAGAATTGGCT 39699 Query 1561 CTGAACTTAGACCAGAACATAAACAACCAATCATGGACAGA 1601 |||| ||||||||||| | |||||||||| || ||| Sbjct 39698 GTGAAGAAAGACCAGAACACACTCAACCAATCAGAGATAGA 39658 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14559930645330