Alignment viewer

BLASTN 2.6.0+ Reference: Stephen F. Altschul, Thomas L. Madden, Alejandro A. Schaffer, Jinghui Zhang, Zheng Zhang, Webb Miller, and David J. Lipman (1997), "Gapped BLAST and PSI-BLAST: a new generation of protein database search programs", Nucleic Acids Res. 25:3389-3402. Database: Apodemus_20sylvaticus_20[genbank_20GCA_5F001305905.1_202015-10-02] 559,629 sequences; 3,758,143,898 total letters Query= NC_027429.1 Length=4590 Score E Sequences producing significant alignments: (Bits) Value seq1723 82.4 2e-12 >seq1723 Length=1657771 Score = 82.4 bits (90), Expect = 2e-12 Identities = 114/160 (71%), Gaps = 0/160 (0%) Strand=Plus/Plus Query 3883 AGAGATATTTACCTGCAAGGTCCCATCTGGGCTAAAATACCCGATACCGATGGACACTTT 3942 ||||| || ||||||||||| |||||||||| || || || | | ||||||||||| Sbjct 977131 AGAGACATCTACCTGCAAGGATCCATCTGGGCCAAGATCCCTCACATGGATGGACACTTC 977190 Query 3943 CACCCGTCTCCACAAATGGGTGGTTTCGGACTTAAAAACCCACCACCGATGATCCTCATC 4002 || || |||| || || || || |||| || || | || | || ||| ||||| Sbjct 977191 CATCCATCTCTCCATATAGGCGGACTCGGGCTGAAGAGACCTCTGCCTCAGATATTCATC 977250 Query 4003 AAAAACACACCCGTTCCCGCCGATCCACCAACGACCTTCA 4042 || ||||| || || | ||| | || ||||||| |||| Sbjct 977251 AAGAACACTCCGGTGCTTGCCAACCCTCCAACGATATTCA 977290 Lambda K H 0.634 0.408 0.912 Gapped Lambda K H 0.625 0.410 0.780 Effective search space used: 14486781146675